Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte10g00075 ATGCCAAGGATGGTTTCTTCTACTGCCTCTGAAACCAGGCCAGATCTTTCTGGCATTGAAAACCAAGTACGAAAATTGGTTGTGGAGTTGAAAAGCTCTTCCCTAGATACCCAAAGAGAAGCAACATCACAACTGCGGCTACTTGCTAAGCACAACATGGATAATCGAATTGTGATTGCAAACTCTGGGGCCATCAGTTTACTTGTTAACTTACTCTGGTCAACTGACGCTGGTATTCAAGAGAATGCTGTCACAGCTCTACTTAACCTATCTATCAATGATAACAACAAAAGTCTCATTGCAAATGCTGATGCAATTGATCCTTTAATTCATGTCCTTGAGACTGGTAGCCCAGAAGCCAAGGAGAACTCAGCTGCCACTCTTTTTAGCTTATCAGTAATTGAGGAGAACAAAATTAAAATAGGAAGGTCAGGGGCAGTTAGACCTCTAGTTGATCTATTGGGAAATGGTACCCCTAGGGGAAAGAAAGATGCAGCCACCGCTTTGTTTAATTTGTCCATTTTTAATGAAAACAAGGGGCGGATTGTACAAGCTGGTGCTGTGAAACATCTTGTGGATTTAATGGACCCTGCAGTTGGGATGGTTGACAAGGCGGTTGCGGTGTTGGCTAATTTGGCCACTATCCCCGAGGGAAGGACTTCAATTGGTCAAGAAAATGGCATTCCTGTTTTGGTCGAGGTTGTGGAGCTGGGTTCTTCTCGAGGAAAGGAGAATGCTGCAGCAGCCCTTTTACATCTTTGTCAAAATAGTGGCAGATTTTGTAGTCAGGTTCTACAAGAAGGAGCTGTACCACCACTGGTGGCTTTGTCACAGTCGGGCACTCCCAGGGCCAAAGAAAAGGCTCAGGCACTACTTAGCTACTTCAGAAATCAAAGACACGGTAATGCTGGGAGGGTCTGA 921 0.4473 MPRMVSSTASETRPDLSGIENQVRKLVVELKSSSLDTQREATSQLRLLAKHNMDNRIVIANSGAISLLVNLLWSTDAGIQENAVTALLNLSINDNNKSLIANADAIDPLIHVLETGSPEAKENSAATLFSLSVIEENKIKIGRSGAVRPLVDLLGNGTPRGKKDAATALFNLSIFNENKGRIVQAGAVKHLVDLMDPAVGMVDKAVAVLANLATIPEGRTSIGQENGIPVLVEVVELGSSRGKENAAAALLHLCQNSGRFCSQVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQRHGNAGRV* 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte10g00075 306 SUPERFAMILY ARM repeat 21 295 IPR016024 -
Pte10g00075 306 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 63 105 IPR000225 GO:0005515
Pte10g00075 306 SMART arm_5 215 255 IPR000225 GO:0005515
Pte10g00075 306 SMART arm_5 175 214 IPR000225 GO:0005515
Pte10g00075 306 SMART arm_5 52 92 IPR000225 GO:0005515
Pte10g00075 306 SMART arm_5 134 174 IPR000225 GO:0005515
Pte10g00075 306 SMART arm_5 93 133 IPR000225 GO:0005515
Pte10g00075 306 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 145 187 IPR000225 GO:0005515
Pte10g00075 306 FunFam RING-type E3 ubiquitin transferase 6 301 - -
Pte10g00075 306 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 186 227 IPR000225 GO:0005515
Pte10g00075 306 Gene3D - 4 300 IPR011989 -
Pte10g00075 306 PANTHER U BOX DOMAIN-CONTAINING 18 295 - -
Pte10g00075 306 Pfam Armadillo/beta-catenin-like repeat 176 213 IPR000225 GO:0005515
Pte10g00075 306 Pfam Armadillo/beta-catenin-like repeat 54 91 IPR000225 GO:0005515
Pte10g00075 306 Pfam Armadillo/beta-catenin-like repeat 136 173 IPR000225 GO:0005515
Pte10g00075 306 Pfam Armadillo/beta-catenin-like repeat 93 132 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte10g00075 Pte-Chr10 741017 742018 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte10g00075 3 305 U-box Gene Family AT2G23140 83.168 2.72e-177 503
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte10g00075 - - qsa:O6P43_024581 508.834