Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte10g00048 ATGAAGCGTGTGGATTATCCTACTTTCGATAATCATAATACTTTGTTGGGATTCTGTGTTTCTGCTGGAATGAACGTCGATGTTGCTTCTAACGTTCGCAACCTTCAGCAAGCACACCCTTGTTCTTCCGCTTCAGATGCAGCACTGCCAACATCTTCACAGAGTATCTTACACTTCCTGCAGCCTTCTACAAACTTCGGATTCATGTCTTATAGTCAAAACAGTAGCTTGTATTCCCCAGTTTCTTTCATGCCTCTCAAGTCTGATGGATCTCTCTGTTTACCTGAAGCTCTTAGGAAGTCACAGTCACAAGCAGTAGTTGCTCCAAAACTGGAGGACTTCTTTGGTGGCGGTACCCATCAGTATGAATGCAATAAATTTAGCAGAAATGGAATGGTTTTGAGAGCAGAGAGAATGATTGACGACCCATCTTCTCAAGGCGGGCAAAGCAGCGAAAGGACAAGCAACCAAGAACAAGGGCAGTATACTTACCATTCTGGCTTTAGTAGCTATTGCATGAATATGAGATCAGACTTGCAAAAGCAAAACAAGGTATCTCATCTCAACTTTCAGGTACTACCAGCAGCAATCACAGAGGATGGAAACCCAGCTGGCACAAAGAGCTGGGCCTTGGGGAGCTACTCGGTGAATCATGCAGCAGAGCAGAGGATGGTTGGCTTTTCAAAGGAAAATGGAGAAATGCAATCGTTAAGCTTGTCCATGAGCCCTGGCTCTCAATCAAGCTATGTTACCGGTTTACAGCACACGTATAAAGCTGCGACAGATTCTATCTCCATGGATACAAAGAAAAGGGATCTAGCTGGAAGGACGGAGACGAAGCAAATTGTTCATAGGAAGTCCTTGGATACATTTGGCCAACGAACATCTCAGTATAGAGGTGTTACAAAGCATAGATGGACTGGCAGATATGAAGCCCATCTGTGGGACAATAGCTGCAAGAAAGAGGGTCAGACTAGGAAAGGAAGACAAGGTATATATGTTGTCAGAAGGGGGTATGATATGGAAGAAAAAGCTGCAAGAGCTTATGATCTGGCTGCGCTCAAGTATTGGGGGTCCTCCACTCATATCAATTTCCCATTGGAAAACTACCACAAAGAACTCGAACAAATGAAGAATATGTCGAGGCAAGAATATGTGGCTCATTTAAGAAGGAAAAGCAGTGGATTTTCTAGAGGTGCTTCCATATACAGAGGAGTAACGAGACATCACCAACATGGAAGATGGCAAGCTAGGATTGGCAGGGTAGCTGGGAACAAAGATCTCTATCTTGGAACATTTAGCACACAAGAGGAGGCAGCTGAAGCTTATGACATTGCAGCTATAAAGTTTCGTGGATTAAATGCTGTAACCAATTTTGACATTACAATATATGACGTTGAAAAAATAATGTCAAGTGGTACTCTTCTAGCTGGCGAATTAGCCAGGCGAAACAAAGATATGCGTAATGACATTGAGAGGTCAACCAATCTGGAGCCTTGTACACAAGAAAATTTTATGTCACACTCACAGATGAACAACGAAAGCCAGCTCGACCGTAAACTCCTTCTCTGCCATTCCATTCAACAGAGTGATCGAGGTCAACCGAATGCCCAAACTTGTGGCACTCAGTCATTCTTTGTAGCTCCAGATAATACTGGTCAAGTAGAGGATTCTAAAAAGATAGGTACTCATTTTTCCAATGCTTCCCTGGAGACGAGCTTGACTAGCTCAAGAGAAGGTGGTCCAAATAGACCAAGTCTGCCAATGCTTTATGGAATGCCTCCACCAGAATCCAAATTATACACTAACGCAATGGGCAATCTGAGTTCCTGGCCTACACCAACCAATCGGAAGCCTACACTTCCTTTGCCACACGTGCCAGTTTTTACTGCCTGGACAGACACCTAA 1908 0.4382 MKRVDYPTFDNHNTLLGFCVSAGMNVDVASNVRNLQQAHPCSSASDAALPTSSQSILHFLQPSTNFGFMSYSQNSSLYSPVSFMPLKSDGSLCLPEALRKSQSQAVVAPKLEDFFGGGTHQYECNKFSRNGMVLRAERMIDDPSSQGGQSSERTSNQEQGQYTYHSGFSSYCMNMRSDLQKQNKVSHLNFQVLPAAITEDGNPAGTKSWALGSYSVNHAAEQRMVGFSKENGEMQSLSLSMSPGSQSSYVTGLQHTYKAATDSISMDTKKRDLAGRTETKQIVHRKSLDTFGQRTSQYRGVTKHRWTGRYEAHLWDNSCKKEGQTRKGRQGIYVVRRGYDMEEKAARAYDLAALKYWGSSTHINFPLENYHKELEQMKNMSRQEYVAHLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGLNAVTNFDITIYDVEKIMSSGTLLAGELARRNKDMRNDIERSTNLEPCTQENFMSHSQMNNESQLDRKLLLCHSIQQSDRGQPNAQTCGTQSFFVAPDNTGQVEDSKKIGTHFSNASLETSLTSSREGGPNRPSLPMLYGMPPPESKLYTNAMGNLSSWPTPTNRKPTLPLPHVPVFTAWTDT* 636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte10g00048 635 SUPERFAMILY DNA-binding domain 296 368 IPR016177 GO:0003677
Pte10g00048 635 CDD AP2 401 462 IPR001471 GO:0003700|GO:0006355
Pte10g00048 635 ProSiteProfiles AP2/ERF domain profile. 402 460 IPR001471 GO:0003700|GO:0006355
Pte10g00048 635 MobiDBLite consensus disorder prediction 143 160 - -
Pte10g00048 635 Pfam AP2 domain 402 452 IPR001471 GO:0003700|GO:0006355
Pte10g00048 635 Pfam AP2 domain 297 358 IPR001471 GO:0003700|GO:0006355
Pte10g00048 635 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 102 535 - -
Pte10g00048 635 CDD AP2 296 366 IPR001471 GO:0003700|GO:0006355
Pte10g00048 635 FunFam AP2-like ethylene-responsive transcription factor ANT 296 368 - -
Pte10g00048 635 MobiDBLite consensus disorder prediction 141 160 - -
Pte10g00048 635 Gene3D AP2/ERF domain 296 368 IPR036955 GO:0003700|GO:0006355
Pte10g00048 635 Gene3D AP2/ERF domain 402 462 IPR036955 GO:0003700|GO:0006355
Pte10g00048 635 ProSiteProfiles AP2/ERF domain profile. 297 366 IPR001471 GO:0003700|GO:0006355
Pte10g00048 635 PRINTS Ethylene responsive element binding protein signature 442 462 IPR001471 GO:0003700|GO:0006355
Pte10g00048 635 PRINTS Ethylene responsive element binding protein signature 298 309 IPR001471 GO:0003700|GO:0006355
Pte10g00048 635 SUPERFAMILY DNA-binding domain 401 461 IPR016177 GO:0003677
Pte10g00048 635 SMART rav1_2 402 466 IPR001471 GO:0003700|GO:0006355
Pte10g00048 635 SMART rav1_2 297 372 IPR001471 GO:0003700|GO:0006355
Pte10g00048 635 FunFam AP2-like ethylene-responsive transcription factor 401 462 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte10g00048 Pte-Chr10 524082 527414 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte10g00048 567 636 AP2-EREBP Transcription Factor Family AT4G37750 32.927 3.68e-06 48.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-AP2 Pte10g00048 AP2 3.3e-08 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte10g00048 K09285 - qsa:O6P43_033936 634.409