Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte10g00045 ATGGGGAGAGCTCCTTGCTGCGATAAAGCCAATGTCAAGAAAGGTCCCTGGTCACCCGAGGAAGATGCAAAACTCAAGGCTTACATTGAGCAGAACGGAATAGGCGGAAACTGGATTGCGTTGCCTCAGAAGATAGGCCTCAAGCGATGTGGCAAGAGCTGCCGTCTCAGGTGGTTGAATTATCTCAGGCCTAACATTAGGCATGGAGGTTTCTCAGAGGAGGAAGACAACATCATCTGCAGTCTGTATGTTAGCATTGGCAGCAGGTGGTCTATTATAGCAGCCCAATTACCCGGACGAACTGATAATGACATAAAGAACTATTGGAACACAAGACTCAAGAAGAAACTGCTCGGAAAGCAGCGGAAAGAGCAGCAAGCAAAAGCTCGCCGGGGTGGCAACCTAAAACAAGAGACGAAGAGAGAAATTGAGAATTTGAATATGGCATCCGAAGGCGTCACAAACCAGGTTTCGTTTTGGACTATGGTGTATAATACTGCAGTAGCTATGCCAGTAACAAATGTACCGAATCAAGAATATTTATCATATGATCCATCATCCTTAAGGAATTTGCTTGTCAAGCTTGGTGGTGGTTTTTCAGGAGACGATCATAAGCGATCATACAACATTACAGTTGCTACAACCGCGAATCGGCAATATGATGCTTGTGATGTTAGTTCTTCCCCACAGCACCGAGTATGTGAAAACACTACGAATAGGGTGAACTCTGGCGCAGCATTCCAAGACACAAAGGAAGTTAACTCTGAGTCCCCGAACGAGCTTCATGGGGCTAATGATAACTTCCCTAAAGATTTGAGTTATTTGACCTTTAGCAACCCAGAGGAAAGAGAGGAGGCGTTGATGGAGGAATGCTGTGCAATGGAGGCCTTGGACATGGTCAATAATGGCAGCAGCACTGGAACTTGCTCCGCAGAGAATGGGAGTTGGGGAGATATGAGCTCTCTTGTTTATTCACCTTTGGTCTCAGGCTATGAAGCTTCCCGGCAAGGAATGCATCAAGATTTTGCTTTCGATGAGTCAAGGTACCTTGGTCAGCGATAA 1062 0.4605 MGRAPCCDKANVKKGPWSPEEDAKLKAYIEQNGIGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIRHGGFSEEEDNIICSLYVSIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKKLLGKQRKEQQAKARRGGNLKQETKREIENLNMASEGVTNQVSFWTMVYNTAVAMPVTNVPNQEYLSYDPSSLRNLLVKLGGGFSGDDHKRSYNITVATTANRQYDACDVSSSPQHRVCENTTNRVNSGAAFQDTKEVNSESPNELHGANDNFPKDLSYLTFSNPEEREEALMEECCAMEALDMVNNGSSTGTCSAENGSWGDMSSLVYSPLVSGYEASRQGMHQDFAFDESRYLGQR* 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte10g00045 353 CDD SANT 71 113 IPR001005 -
Pte10g00045 353 SMART sant 13 64 IPR001005 -
Pte10g00045 353 SMART sant 67 115 IPR001005 -
Pte10g00045 353 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Pte10g00045 353 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Pte10g00045 353 Gene3D - 70 144 - -
Pte10g00045 353 Coils Coil 136 156 - -
Pte10g00045 353 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Pte10g00045 353 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Pte10g00045 353 FunFam Transcription factor RAX3 7 68 - -
Pte10g00045 353 CDD SANT 16 62 IPR001005 -
Pte10g00045 353 Gene3D - 7 68 - -
Pte10g00045 353 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Pte10g00045 353 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Pte10g00045 353 PANTHER OS09G0431300 PROTEIN 1 297 - -
Pte10g00045 353 FunFam Transcription factor RAX3 70 145 - -
Pte10g00045 353 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte10g00045 Pte-Chr10 484656 486140 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte10g00045 1 325 MYB Transcription Factor Family AT3G49690 46.667 6.51e-87 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pte10g00045 Myb_DNA-binding 6.1e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte10g00045 K09422 - qsa:O6P43_033945 377.096