Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte10g00042 ATGGGTCTAGATGATCCTTGTAAATTGGTTTTAGGTTTAGGTTTAGCTACGAGTATCGCAGAAGGACTCACTTCATCAGCAAAAGCCTTTCATCATTATCCTAGCAGGCCAAACAAGTGTGCATGGAGTTCTTCAGCAACTGGTACCCATTTCGAGCCATCTCTGACATTGGGTCTCTCCGGTGAGAGTAATCTTGTCGTTCCCAAGAGGATACTCGATGCGACCATGAATAAAGGTTGCGAGGAAGCCTTGGAGTTGAGTGGCCAAGCGTCACCTCACAGTGCTGTATCATCCTTCACCAGTGGGAGGGTCAAGAGAGAAAGAGACCTTAGCAGCGAAGTAGAGGCAGAGAGGATGTCGTTGAAGGTGAGCGACGAAGATGAAGACGGTACGAATGCAAGAAAGAAGCTTAGACTTACCAAAGAACAATCTGCGCTATTAGAGGAAAGCTTCAAGCAGCATAGCACTCTCAACCCTAAACAAAAGCAAGCTTTAGTCAGGCAGTTGAACCTTCGGCCTCGACAAATTGAAGTGTGGTTCCAGAACAGGAGAGCAAGGACAAAGCTGAAGCAGACGGAGGTGGACTGTGAGTTCTTAAAGAAATGCTGCGAAACGCTGACAGATGAAAATAGGAGGCTGCAGAAGGAGCTGCAAGAATTGAAGGCCATGAAACTAGTCCAGCCCTTGTATATGCCCATGCCGGCTGCGACTCTTACTATGTGTCCTTCATGTGAGAGGATCGGTGGTCTCAATCTCAAGGATGGTGCATCCAAGGCCTCAATCTCTATGGCCCCCAAGCCTCACTTCTTTAATCCCTTCACCCATCCTTCCGCTGCTTGCTAG 843 0.4816 MGLDDPCKLVLGLGLATSIAEGLTSSAKAFHHYPSRPNKCAWSSSATGTHFEPSLTLGLSGESNLVVPKRILDATMNKGCEEALELSGQASPHSAVSSFTSGRVKRERDLSSEVEAERMSLKVSDEDEDGTNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALVRQLNLRPRQIEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLQKELQELKAMKLVQPLYMPMPAATLTMCPSCERIGGLNLKDGASKASISMAPKPHFFNPFTHPSAAC* 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte10g00042 280 MobiDBLite consensus disorder prediction 107 132 - -
Pte10g00042 280 CDD homeodomain 134 191 IPR001356 GO:0003677
Pte10g00042 280 Pfam Homeodomain 134 188 IPR001356 GO:0003677
Pte10g00042 280 Gene3D - 127 195 - -
Pte10g00042 280 SMART halz 190 233 IPR003106 GO:0006355|GO:0043565
Pte10g00042 280 SUPERFAMILY Homeodomain-like 132 198 IPR009057 -
Pte10g00042 280 ProSiteProfiles 'Homeobox' domain profile. 130 190 IPR001356 GO:0003677
Pte10g00042 280 ProSitePatterns 'Homeobox' domain signature. 165 188 IPR017970 GO:0000981|GO:0006355
Pte10g00042 280 SMART HOX_1 132 194 IPR001356 GO:0003677
Pte10g00042 280 Coils Coil 196 223 - -
Pte10g00042 280 FunFam Homeobox-leucine zipper protein 18 119 195 - -
Pte10g00042 280 Pfam Homeobox associated leucine zipper 190 224 IPR003106 GO:0006355|GO:0043565
Pte10g00042 280 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 31 257 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte10g00042 Pte-Chr10 452579 455090 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte10g00042 1 281 Homeobox Transcription Factor Family AT4G37790 56.908 1.72e-96 283
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Pte10g00042 Homeodomain 8.2e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte10g00042 K09338 - jre:109019457 387.882