Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte10g00038 ATGAATGCCTCATATTCTGATTACATGTGGAACCCAAGAGGAAGTCATCTAGAAGATGATGACTCTTGGGAGGTAAGGGCCTTTGCTGAAGACACTAGAAACGTCTTCGGCAGCACTTGGCCTCCTAGGTCCTACACTTGCACCTTTTGCAGAAGAGAGTTTCGGTCAGCCCAAGCCCTGGGAGGACATATGAATGTGCACCGCCGTGATAGAGCCCGACTACATCAATCACAGTCACAACCATCGACTTCCATGAACTTCAACTCATCCCCCAATACTTCTTCCTATTTAGTCCCAACACAAGAACTCGGGGAAGATAAAGGATTGTGCTTATTCTACCAATTGCCACCCGCTAGTAACACTTCCCCAACCACAATCTCAAAATCAACCAGTGGCGCTTCCTCTACGTTCCTCTCCTTCTCACCTTATCAGACAAATACTGTGATTTTACCCTCGTCGACTCGTTGCGCAATGTCACCAACAGAAGCCAATTCATCTTACCGCTACTCTAGCAAACCTCAAGAACCTTCTTCTTCTTCTTCAGACAAAGGCCACGAAGAACTTGATTTAGAGCTCCGGCTGTAA 585 0.4684 MNASYSDYMWNPRGSHLEDDDSWEVRAFAEDTRNVFGSTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRARLHQSQSQPSTSMNFNSSPNTSSYLVPTQELGEDKGLCLFYQLPPASNTSPTTISKSTSGASSTFLSFSPYQTNTVILPSSTRCAMSPTEANSSYRYSSKPQEPSSSSSDKGHEELDLELRL* 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte10g00038 194 Gene3D Classic Zinc Finger 39 96 - -
Pte10g00038 194 MobiDBLite consensus disorder prediction 72 96 - -
Pte10g00038 194 SMART c2h2final6 45 67 IPR013087 -
Pte10g00038 194 ProSitePatterns Zinc finger C2H2 type domain signature. 47 67 IPR013087 -
Pte10g00038 194 PANTHER OS07G0101800 PROTEIN 18 194 - -
Pte10g00038 194 ProSiteProfiles Zinc finger C2H2 type domain profile. 45 72 IPR013087 -
Pte10g00038 194 Pfam C2H2-type zinc finger 45 69 - -
Pte10g00038 194 MobiDBLite consensus disorder prediction 76 96 - -
Pte10g00038 194 MobiDBLite consensus disorder prediction 179 194 - -
Pte10g00038 194 SUPERFAMILY beta-beta-alpha zinc fingers 42 72 IPR036236 -
Pte10g00038 194 MobiDBLite consensus disorder prediction 157 194 - -
Pte10g00038 194 MobiDBLite consensus disorder prediction 157 178 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte10g00038 Pte-Chr10 432443 433027 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte10g00038 8 115 C2H2 Transcription Factor Family AT4G17810 52.893 5.92e-35 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pte10g00038 zf-C2H2_6 3.7e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte10g00038 - - pop:18094173 200.675