Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte10g00034 ATGCCAGTTCCACTTGCTCCTTACCCGACAACGACACCGGCACCGGCACCGGCACCGGCACCGTATACAGCGCCTGCAAACGGTGCTCAAAGCCAGCTTGTCTGTTCTGGATGTCGAAACCTTCTTCTCTACCCAGTTGGAGCAACTTCTGTCTGCTGTGCGGTTTGTAATGCAGTCACAGCTGTACCACCTCCTGGCACAGAAATGGCACAGTTGGTTTGTGGTGGCTGTCATACCTTGCTCATGTATATTCGTGGGGCAACAAGCGTGCAATGCTCTTGTTGTCACACTGTCAATCTAGCTCTGGAAGCAAATCAGGTCGCACATGTCAGCTGCGGGAGCTGCAGGATGCTGCTAATGTATCAATATGGAGCGCGGTCTGTGAAATGCGCTGTTTGCAATTTTGTGACATCAGTTGGGGCCTCAACAAGCACGACTGAGCAGAAGTTCAACAGCTGA 459 0.5229 MPVPLAPYPTTTPAPAPAPAPYTAPANGAQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGSCRMLLMYQYGARSVKCAVCNFVTSVGASTSTTEQKFNS* 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte10g00034 152 PANTHER PROTEIN LSD1 13 62 IPR040319 -
Pte10g00034 152 Pfam LSD1 zinc finger 112 136 IPR005735 -
Pte10g00034 152 Pfam LSD1 zinc finger 74 98 IPR005735 -
Pte10g00034 152 Pfam LSD1 zinc finger 35 59 IPR005735 -
Pte10g00034 152 NCBIfam zinc finger domain, LSD1 subclass 71 100 IPR005735 -
Pte10g00034 152 NCBIfam zinc finger domain, LSD1 subclass 32 62 IPR005735 -
Pte10g00034 152 NCBIfam zinc finger domain, LSD1 subclass 109 139 IPR005735 -
Pte10g00034 152 SUPERFAMILY Multiheme cytochromes 35 133 IPR036280 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte10g00034 Pte-Chr10 376452 378123 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Pte10g00034 zf-LSD1 9.5e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte10g00034 - - qsu:112000975 268.47