Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte10g00030 ATGGGAGGAGCGTCACTGCCACCGGGTTTCCGTTTCCACCCAACCGATGAAGAGTTAGTGGGATACTACCTGAAAAGAAAAGTGGAGGGTCTTGAAATGGAGCTTGAAGTCATCCAAGTGGTTGATTTGTATAAATTCGATCCATGGGAATTGCCAGAGAAATCATTCCTTCCAAAACGTGACATGGAGTGGTTCTTCTTCTGTCCCCGAGATAGGAAGTATCCAAATGGCTCTCGAACAAATAGAGCCACAAAGGCAGGCTACTGGAAAGCCACAGGAAAGGATCGAAAGGTCGTCTGCAAGTCTGACAACTCCAATGTGACAGGATACAGGAAAACATTGGTTTTCTATCGTGGACGCGCCCCTTTAGGAGATCGAACTGAATGGGTTATGCATGAGTATCGACTGTGTGATGATCTCAATCAAGGATCTCCAAGTTTCCAGGGAGCTTTTGCTTTATGCCGAGTTGTCAAGAAAAATGAGCACATACAGAGGACAAGTGATTTACATGTGGAATCAAAGGCCAAGAAAGTTGCAAGTAGTTCAAGTAACTGGGATTTCAACGCAATGCGAACCACAAATGAACCCCTAAGCATCACCAGCGACATTTCTTCTCAAGCAAGTTACGTGTACACTGACATCCGTTATTCAAGTCCCATTTCTTCTCCATACGAAGCGGCTCCACCAGCAGATGTCGAGCCAGCTGCAATGGAGTCCAATCCTGCACACTTCTGGGTCTCTCCTGATTTAATACTAGATTCTTCAAAGGAGTATCCACCAGTACAAGAAGCTGCATCTGCATACTTCCCAAAATATGATTTCTCAAACGCAATAGCACCGTGGCTGTCATATGAACAGCAGCCAGAAATTTCACCTGGTTCGTCATACTCAAATTTCAATGCAGATATGGAACTTTCTGATGATCTTAGCCAAATTTGCTACATGCCACCTTATTCAGGACATGATAACTTAATGGATTTCTCTGCAAATGGTGGTGTGTCTTATGAAGGTGGTCAGCAACTCAATTCAATGAGATACCAAAAACCCTTCTGA 1053 0.4416 MGGASLPPGFRFHPTDEELVGYYLKRKVEGLEMELEVIQVVDLYKFDPWELPEKSFLPKRDMEWFFFCPRDRKYPNGSRTNRATKAGYWKATGKDRKVVCKSDNSNVTGYRKTLVFYRGRAPLGDRTEWVMHEYRLCDDLNQGSPSFQGAFALCRVVKKNEHIQRTSDLHVESKAKKVASSSSNWDFNAMRTTNEPLSITSDISSQASYVYTDIRYSSPISSPYEAAPPADVEPAAMESNPAHFWVSPDLILDSSKEYPPVQEAASAYFPKYDFSNAIAPWLSYEQQPEISPGSSYSNFNADMELSDDLSQICYMPPYSGHDNLMDFSANGGVSYEGGQQLNSMRYQKPF* 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte10g00030 350 ProSiteProfiles NAC domain profile. 6 159 IPR003441 GO:0003677|GO:0006355
Pte10g00030 350 FunFam Nac domain-containing protein 86 15 162 - -
Pte10g00030 350 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 5 206 - -
Pte10g00030 350 Pfam No apical meristem (NAM) protein 7 136 IPR003441 GO:0003677|GO:0006355
Pte10g00030 350 SUPERFAMILY NAC domain 4 159 IPR036093 GO:0003677|GO:0006355
Pte10g00030 350 Gene3D NAC domain 15 164 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte10g00030 Pte-Chr10 351921 354255 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte10g00030 1 306 NAC Transcription Factor Family AT4G17980 54.516 8.78e-109 318
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pte10g00030 NAM 1.2e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte10g00030 - - qsa:O6P43_033983 524.628