LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pte10g00016	ATGTTTTTTACTGTGGACAACGTTTCCATGGCTTTCATGTCTGCACCGAAACTTCTCTTTCTGACTGGAATTGCTTTTCTGCTGCTTTCGCCAAAGTTGGCAGTTGGAAACGTAGCTTTAAACTCTATACTGTCTGCCGATGATGCTAGCTCTGCACCATGGCTTTCATCTTCCGGAGAATTTGCTTTTGGATTTCACCAACCTGACAATACAACCGATGCTTTCTTACTTGCCATATGGTTCAACAAGATACCTGAGAAAACCATTGTTTGGCATGCATATTTTGATAACCATCCAGCTCCCAGGGGATCACAAGTCAAGCTTACAGCAACGGGTCTGGTGCTTACAGATCCCGGTGGCCAGGTCACATGGAGAGCGCAACCAACTGGTCCAAATCAAACCGTTTCTTACGGGCTTATGCTTGATACAGGTAACTTTGCCCTGCTGAGTACTCGTAATAGTTCCAACTACCTGTGGGAGAGCTTCAACAACCCCACCGATACCTTGTTGCCTACCCAACTACTGCGACAAGATGATATGCTGTTTTCACGACTGACAGAAACAAATTTCTCAAAAGGAAGGTTTGAGCTTTATTTCATGAATGGTCAACTGACTATCAGCCCGCTTGCCTGGCCTACTGATTTCCGATACCAGTCTTACTACAACTCCACCAGTGCTGCGGTTACAACAACCTCTTCTCTACAGCTCGTTTTCAACGAGTCAGCTGATCTCTATATAGAGGGAAATGGTGGAGCCGGAGGGAACGGCACCACTGCCATCCAGCTCGATTGGAATGGGGTGGCCCTTGATCCCAATTCCTTTTACTACAGAGCGACACTCGACTATTATGGCTTATTCACACAATATGCGTATCCTAGAGCAGGTTCCATCTCTAACGGCGACCAAGCTGGCTGGTCTATCCTGAGGTATGTTCCCCTCAACATTTGTTCTGCTATCTTTTACGACAAAGGCAGCGGGGCATGCGGCTATAACAGCTATTGCTCCATGCAAAACCAGAGGCCTACATGTCAGTGCCCTGATGGCTATTCACTCATCGATCCAACCGATCCATTCAGCGGATGCAAACCTAATGTAAGTCTAGGTTGTGAGGTAGAAGCAGAACTGCAAGCCCGACCAGAAGAGATGTATGAATTCAGAATTATGAGAAACGTGGATTGGCCACTGGGTGACTATGAAAGCATGCAACCATATAATCAAAGTGGGTGCCAGAATTCATGCTTGTATGATTGCTTCTGTGCGGTTGCAATTTTTGCCAATCAGACATGTTGGAAGAAAAGGTTTCCACTTGGTAATGGGAGGGCGACTAACGGTGGCCAGATAGTTCTTTTAAAAACCAGGCTTGAGCCAGTGGCCACCAACCTTGATCATGCAGCTGAATCGAAGGATGAACACACCAAGGTTCTTACGGGATCACTTATTGGGTCCGCTGTCGTGAATGGGTTGCTTCTGCTCACTGTTATTTTGGTCCTCAACACCACCAAATACAAGCCTAGGAAACCCGGCCCGTCATCTCTATCATCTTCTAATTCTTCCAAGGAAATAAATATTCATAGATTTACTTACCAAGAACTGGAAGAGGCAACAAATGGGTTCAAGGAAGTACTTGGGAGGGGTTCTTTTGGCACCGTCTACAAGGGTGTCCTAAGCTATGGCCCTCAAAGCCTAGTTGCCGTAAAGAAACTGGATAGGTTGCCAGAAGAAGGAGAAAAGGAATTCAAGAATGAATTGAATGCTATTGGGAGAACATGCCACAAAAATCTGGTCCGTCTGATTGGTTTTTGTGAGGAAGGACATCACAGGATCATAGTCTATGAGTTCATGGGCAATGGTACCCTGGCAGATCTCCTCTTCAAACAACCCAGACCCAGTTGGAGTGTCAGAGTTAGAATTGCTTTGGGAATCGCCAGAGCTTTAGTGTACTTGCAGGAAGAGTGTGATATCCCCATCATTCATTGTGACATAAAACCTCAAAATGTACTATTAGATGAAAATTACAAGCCAAAAGTTTCTGACTTTGGCTTGGCCAAGTTGTTAATGTCTGGTCAGACAGGAACTATTACTATGATTCGAGGAACTCGTGGATATGTTGCTCCTGAATGGTTCAAGAATGTTCCAGTAACGGCTAAGGTAGATGTATACAGCTTTGGAACGATGTTGCTGGAAATCCTATGTTGTAGGAGGAGTGTGGTAATAGAACCGGGGCAGGAAGAAAAAGCCATACTTACAGAATGGGCTTATAACTGTTATTTAGAAGGAAGACTAGATCTTCTGGTAGAAGACGATGAGGAGGCCATGGCTGACAGTAGCAGGCTGCACAAGTGGGTAATGATAGCAATTTGGTGCACCCAAGAACACGCTGAAGTAAGGCCTACCATGAAGATGGCCATGCAAATGCTTGAAGGATTTCTTGAAGTCCCTCTGCCACCTCCTCCATCGTCTCTCCCATCAACAATCTGA	2478	0.4552	MFFTVDNVSMAFMSAPKLLFLTGIAFLLLSPKLAVGNVALNSILSADDASSAPWLSSSGEFAFGFHQPDNTTDAFLLAIWFNKIPEKTIVWHAYFDNHPAPRGSQVKLTATGLVLTDPGGQVTWRAQPTGPNQTVSYGLMLDTGNFALLSTRNSSNYLWESFNNPTDTLLPTQLLRQDDMLFSRLTETNFSKGRFELYFMNGQLTISPLAWPTDFRYQSYYNSTSAAVTTTSSLQLVFNESADLYIEGNGGAGGNGTTAIQLDWNGVALDPNSFYYRATLDYYGLFTQYAYPRAGSISNGDQAGWSILRYVPLNICSAIFYDKGSGACGYNSYCSMQNQRPTCQCPDGYSLIDPTDPFSGCKPNVSLGCEVEAELQARPEEMYEFRIMRNVDWPLGDYESMQPYNQSGCQNSCLYDCFCAVAIFANQTCWKKRFPLGNGRATNGGQIVLLKTRLEPVATNLDHAAESKDEHTKVLTGSLIGSAVVNGLLLLTVILVLNTTKYKPRKPGPSSLSSSNSSKEINIHRFTYQELEEATNGFKEVLGRGSFGTVYKGVLSYGPQSLVAVKKLDRLPEEGEKEFKNELNAIGRTCHKNLVRLIGFCEEGHHRIIVYEFMGNGTLADLLFKQPRPSWSVRVRIALGIARALVYLQEECDIPIIHCDIKPQNVLLDENYKPKVSDFGLAKLLMSGQTGTITMIRGTRGYVAPEWFKNVPVTAKVDVYSFGTMLLEILCCRRSVVIEPGQEEKAILTEWAYNCYLEGRLDLLVEDDEEAMADSSRLHKWVMIAIWCTQEHAEVRPTMKMAMQMLEGFLEVPLPPPPSSLPSTI*	826

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pte10g00016	825	Pfam	Protein kinase domain	539	804	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pte10g00016	825	Pfam	D-mannose binding lectin	88	178	IPR001480	-
	Pte10g00016	825	Gene3D	Transferase(Phosphotransferase) domain 1	614	812	-	-
	Pte10g00016	825	SUPERFAMILY	Protein kinase-like (PK-like)	517	807	IPR011009	-
	Pte10g00016	825	SMART	serkin_6	536	810	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pte10g00016	825	PANTHER	G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5	45	817	-	-
	Pte10g00016	825	SUPERFAMILY	alpha-D-mannose-specific plant lectins	89	183	IPR036426	-
	Pte10g00016	825	PIRSF	SRK	8	824	IPR024171	GO:0004674
	Pte10g00016	825	FunFam	G-type lectin S-receptor-like serine/threonine-protein kinase	614	813	-	-
	Pte10g00016	825	FunFam	S-receptor-like serine/threonine-protein kinase	508	613	-	-
	Pte10g00016	825	ProSiteProfiles	Bulb-type lectin domain profile.	40	161	IPR001480	-
	Pte10g00016	825	Gene3D	Phosphorylase Kinase; domain 1	503	613	-	-
	Pte10g00016	825	ProSiteProfiles	Protein kinase domain profile.	536	810	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pte10g00016	825	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	656	668	IPR008271	GO:0004672\|GO:0006468
	Pte10g00016	825	SMART	blect_4	41	165	IPR001480	-
	Pte10g00016	825	ProSitePatterns	Protein kinases ATP-binding region signature.	542	567	IPR017441	GO:0005524
	Pte10g00016	825	CDD	STKc_IRAK	542	809	-	-
	Pte10g00016	825	Gene3D	-	46	164	IPR036426	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pte10g00016	Pte-Chr10	188803	191280	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pte10g00016	522	808	Receptor kinase-like Gene Family	AT1G60800	41.497	3.16e-67	232

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_SD-2b	Pte10g00016		Pkinase	3e-45	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pte10g00016	-		-	qsa:O6P43_024388	874.004