Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte10g00011 ATGGATGAAGAAATTGAAGGACCTCCTAACAGAGAACTCTACGCACTCTTGCATCTATCCCCCGAGGCATCCGATGAAGAAATCAGAAAAGCTTATCGCCAATGGGCGCAAGTCTACCATCCGGATAAATACCAAGCTCCTCAGATGAAAGACATTGCCACTGAGAACTTCCAACGCATATGTCAAGCGTATGAGATATTGTCGGATCCCAATAAAAGACAAATATATGATATATATGGTATGAAGGGGTTGACTTCTGGTTTGGAGCTCGGTCCGAAATTGAATAAAGTGGAGGAGATAAAAGAAGAGCTGGAGAGATTACGAAAGCGCAAGGAACAAGAGAAGATGGCTGCCCATTTTCGATCTTCTGGTACAATCCTGGCTAATATGTCGTTGCCACACTTTCTCGACGGTGACGGCGTCTTGAGAGGAATGGCTATGACGAGTGAAGTACAATCCAAATTATCAAAACGCAACATTGTATCTATAGGAGGCAATTTGGCAGTTAATGAAAATGCTGGCGGTGGAGCTGCCTCTGCTGTATTTAGGCATGAGATTTCTTCCGTTTCTTCTCTACAATTTATGGCTTCAGCTGGTTTACACTCCCTTATTGGTGTGGAAACAACTCGTTGTCTATCACAACACTCAACTGCAACAATGGGTATGGCAATATCACTGAAAGATTGCTCTTTAAATCTTTCAAATTCCTGGAATCGCCAATTGTCTGAATCAGCAACTGGAAATATTCAGCTTAATCTAGGGTCAGAATCGTCAATAGCTGTTGGATGGCAAAAGAAAGATGACAAATCATCTGCTTCAGGAGAACTGAAGTTTGGCATAGGTTCTTTTGGGGCAACGGCTCATTATATGCACCGCTTTTCATCAAAATCGCATGGTCGTATTGCAGGCAGAGTCGGAAGTACGGCCCTTGAGATTGAAGTTGGTGGTGGGAGGAAATTGTCTAAATTTAGCACCATGCGCTGGTTATATTCAATAGGGATTCAGGGCATCTTTTGGAAGATTGAGTTGCACCGTGGTGGGCAAAAGTTAGTGGTTCCGGTTTTGCTTTCTAGGCATTTGAACCCATTATTTGCAACAGGAGCGTTATTCATTCCAACATCCCTTTACTTTCTTTTGAAGAAATTAGTTGTCAAGCCTTATTATCTCAAGAGAACAAAGCAAAAGGCTTTGGAAGATACGGAAAAAAATTCTGCTCAGGTTCGTCAGGCTAGGGCTGCTGCAGAGAAAGCTCAGCAATTATTGGAAAATGTGGCAAATAGGAAAAAAAATAAGCAACTAGAAACGGGAGGACTCGTTGTCTCTAGAGCCCTTTATGGAATCAAAGAGTCTCTGAGAAAGGTGAATGAATCCAGTGCAACATTTGATGCATCAAATTTACAAGTCATCGACGTGACAATTCCTTTAAATTTCCTTGTCAACGAGTCTGGCCAACTTAAGCTTCACGAGGGAGTTAAAAAATCTGGCATCATGGGTTTCTATGATCCGTGTCCTGGAGAACCAAAAGAATTACACGTAGAGTACACTTATGCTGGTAAAGAATACAAGGTGATAGTTGAAGATTTCCAAGAACTGTTGATACCTCAACCTGCGCATAGAATTTAG 1623 0.4196 MDEEIEGPPNRELYALLHLSPEASDEEIRKAYRQWAQVYHPDKYQAPQMKDIATENFQRICQAYEILSDPNKRQIYDIYGMKGLTSGLELGPKLNKVEEIKEELERLRKRKEQEKMAAHFRSSGTILANMSLPHFLDGDGVLRGMAMTSEVQSKLSKRNIVSIGGNLAVNENAGGGAASAVFRHEISSVSSLQFMASAGLHSLIGVETTRCLSQHSTATMGMAISLKDCSLNLSNSWNRQLSESATGNIQLNLGSESSIAVGWQKKDDKSSASGELKFGIGSFGATAHYMHRFSSKSHGRIAGRVGSTALEIEVGGGRKLSKFSTMRWLYSIGIQGIFWKIELHRGGQKLVVPVLLSRHLNPLFATGALFIPTSLYFLLKKLVVKPYYLKRTKQKALEDTEKNSAQVRQARAAAEKAQQLLENVANRKKNKQLETGGLVVSRALYGIKESLRKVNESSATFDASNLQVIDVTIPLNFLVNESGQLKLHEGVKKSGIMGFYDPCPGEPKELHVEYTYAGKEYKVIVEDFQELLIPQPAHRI* 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte10g00011 540 Coils Coil 94 117 - -
Pte10g00011 540 SUPERFAMILY Chaperone J-domain 10 76 IPR036869 -
Pte10g00011 540 SMART dnaj_3 11 72 IPR001623 -
Pte10g00011 540 Pfam DnaJ domain 13 77 IPR001623 -
Pte10g00011 540 Pfam DnaJ-like protein C11, C-terminal 386 534 IPR024586 -
Pte10g00011 540 Coils Coil 397 434 - -
Pte10g00011 540 PRINTS DnaJ domain signature 14 32 IPR001623 -
Pte10g00011 540 PRINTS DnaJ domain signature 72 91 IPR001623 -
Pte10g00011 540 PRINTS DnaJ domain signature 32 47 IPR001623 -
Pte10g00011 540 PRINTS DnaJ domain signature 52 72 IPR001623 -
Pte10g00011 540 CDD DnaJ 12 69 IPR001623 -
Pte10g00011 540 PANTHER CHAPERONE PROTEIN DNAJ 13 1 540 IPR042162 -
Pte10g00011 540 ProSitePatterns Nt-dnaJ domain signature. 57 76 IPR018253 -
Pte10g00011 540 Gene3D DnaJ domain 7 89 IPR036869 -
Pte10g00011 540 ProSiteProfiles dnaJ domain profile. 12 80 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte10g00011 Pte-Chr10 100469 109227 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte10g00011 14 79 C2H2 Transcription Factor Family AT1G74250 44.118 3.89e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte10g00011 K09531 - cave:132173463 798.505