Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte10g00006 ATGGCGTACCAGCCACTTCAGGGTCCGAGTTCGCGATCCAGCTCCACTAGCTCTGGTTTTCAATTCGGGAATTCTCCATTCGGGGATACAACTTATACCAAAGTCTTCGTCGGGGGTTTGGCTTGGGAGACTCAGAGCGATACCATGCGCCGCTACTTCGAACAGTTTGGCGACATTCTTGAGGCCGTTGTCATCACAGATAAGAACACAGGCCGATCCAAGGGCTACGGTTTTGTCACTTTTCGGGAACCCGAAGCAGCTAGGAGAGCTTGTGGTGATGCAACCCCAATTATTGACGGTAGGCGAGCTAACTGTAATCTGGCCTCACTCGGCCGACCGCGCCAGCCTCTACCCTATGGACGTTTGAGGCCGGGCCTCCCCCCCACATTGGTAGTTTCCAACCTGCCAGAAGTGCTTATGCTGGCAGTTTTGGCTATCAACAACCACTTTCGTACTGTTATAATCAAGGATTGA 474 0.5253 MAYQPLQGPSSRSSSTSSGFQFGNSPFGDTTYTKVFVGGLAWETQSDTMRRYFEQFGDILEAVVITDKNTGRSKGYGFVTFREPEAARRACGDATPIIDGRRANCNLASLGRPRQPLPYGRLRPGLPPTLVVSNLPEVLMLAVLAINNHFRTVIIKD* 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte10g00006 157 SMART rrm1_1 34 106 IPR000504 GO:0003723
Pte10g00006 157 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 27 114 - -
Pte10g00006 157 PANTHER BOULE-RELATED 11 134 - -
Pte10g00006 157 CDD RRM_RBM24_RBM38_like 33 108 - -
Pte10g00006 157 MobiDBLite consensus disorder prediction 1 22 - -
Pte10g00006 157 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 33 110 IPR000504 GO:0003723
Pte10g00006 157 Gene3D - 3 120 IPR012677 -
Pte10g00006 157 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 35 90 IPR000504 GO:0003723
Pte10g00006 157 SUPERFAMILY RNA-binding domain, RBD 9 122 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte10g00006 Pte-Chr10 48910 49803 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte10g00006 29 109 C2H2 Transcription Factor Family AT2G19380 40.741 1.58e-15 70.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte10g00006 - - cpap:110818054 197.208