Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste9g01587 AATGCTTGACGAGAACGAGAACCATGAATCAACTGGGTGGTGTTTTCCTTTTGGTTCTCTCAGTATTATTCGTCCATGTTAGAGCACAGAATGCACCTTCAGGAGATGCTGTCTCCAATTTCCAGCCAAGCCTTGCTGTTGTCATAGGTATCCTTGGTGTCATGTTCTTACTGACATTCTTTCTTCTCATGTATGCAAAATTCTGCAAACGCCGTGCTTCAGCTCCTGTTGGGGATAGAAGAAATCAACAAACTCTTATGAGATCAAGGTCTAGATTCTCAGGAATCGATAAGACTGTCATAGAATCACTCCCCTTCTTTAGATTCTCTTCACTCAAAGGTTCAAAGGAAGGGCTGGAGTGTGCAGTATGCTTATCAAAGTTTGAAGATGTTGAAATTCTCAGACTCCTACCAAAGTGCAAGCACGCTTTTCATATTGATTGCATAGACCACTGGCTTGAAAAGCACTCTAGCTGTCCTATTTGCAGGCACAAGGTCAACCCTGAGGACCACACAACCTTCACATATTCAAACAGTTTAAGGAGGCTAGCAAACCAATCAGAGCATGAAGAAGAATCTAACATAGAGATCTTTGTCCAGAGAGAGGAAGAGAATTTTGGTTCATCAAGATTCAGTGTTGGAAGCAGCTTTCGGAAAACGGGTAAGGATGTCAAGGAAGAAGAATTGCTCATCCAAAAAGGAGCAGAAGATAGTGATGCTAACCTGAAGGGGTATCATAAACACAACCACAGGATTACTATATCTGATGTTGTGTTCAAGCACAGGTGGAGCAACGTCAGTTCTTCAGACCTTATGTTTTTGAACTCAGAGATGCTGAACGCTACATCAAGCAACAGATTCAATGACTTGGAATCAAATGCTGATCCAATGTCAACTACAAGAGGGGTGGTGGAACATGAGCAAATTAGGAATATCAAGGAGGAGATGGAGAGGAAGATTTCCTTTGAGAGTAAAGTTAGTGCACTAAACAACATCAAACCAGTTTCAGATAAGGATTCTACTTTTACATCAGATTCTGCAGGAAAATCAAGTCACGCACCAAAGTATGCTAACGCTGGTGAGAAAAGGTCAATGTCAGAAATCACGGCTGTCTCTAGATTTGGGGATTTAGGCATGAAAATGAGGGTCATAAACGATTCTTCTTCCCTTCGAGACAACTTTAAAGAGGAAAGAATGAGGCAGATTTGGTTTCCAATTGCCAGAAGAACAGCTCAATGGTTTGTGAATAGAGAAAGAAGGACCCAGCACTCTCAGAATAAAAACCAACCATTAGATGTACAGGTTCCTTGTTTTTGTTTCAATCTGTATTTTTTTATTCTTATGAACTGCATAAACTTTGTTAATCTTTCTATGACGGAAAATTTAAGGACCCCTCGTGACCAGAATAATAGAAATCCTTGTAGATTTAAAATTCTATCTTATTTCTCATTTCGTAATCAATTTTCTATTGATTTTCAACAAGAA 1484 0.3976 MNQLGGVFLLVLSVLFVHVRAQNAPSGDAVSNFQPSLAVVIGILGVMFLLTFFLLMYAKFCKRRASAPVGDRRNQQTLMRSRSRFSGIDKTVIESLPFFRFSSLKGSKEGLECAVCLSKFEDVEILRLLPKCKHAFHIDCIDHWLEKHSSCPICRHKVNPEDHTTFTYSNSLRRLANQSEHEEESNIEIFVQREEENFGSSRFSVGSSFRKTGKDVKEEELLIQKGAEDSDANLKGYHKHNHRITISDVVFKHRWSNVSSSDLMFLNSEMLNATSSNRFNDLESNADPMSTTRGVVEHEQIRNIKEEMERKISFESKVSALNNIKPVSDKDSTFTSDSAGKSSHAPKYANAGEKRSMSEITAVSRFGDLGMKMRVINDSSSLRDNFKEERMRQIWFPIARRTAQWFVNRERRTQHSQNKNQPLDVQVPCFCFNLYFFILMNCINFVNLSMTENLRTPRDQNNRNPCRFKILSYFSFRNQFSIDFQQE 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste9g01587 487 MobiDBLite consensus disorder prediction 329 343 - -
Pste9g01587 487 SUPERFAMILY RING/U-box 92 161 - -
Pste9g01587 487 CDD RING-H2_EL5-like 112 155 - -
Pste9g01587 487 SMART ring_2 113 154 IPR001841 -
Pste9g01587 487 MobiDBLite consensus disorder prediction 329 354 - -
Pste9g01587 487 FunFam RING-H2 finger protein ATL43 88 162 - -
Pste9g01587 487 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 24 411 - -
Pste9g01587 487 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 87 164 IPR013083 -
Pste9g01587 487 ProSiteProfiles Zinc finger RING-type profile. 113 155 IPR001841 -
Pste9g01587 487 Pfam Ring finger domain 112 155 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste9g01587 Pste-Chr9 16112876 16114475 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste9g01587 7 414 C3H Transcription Factor Family AT4G28890 48.394 6.84e-113 338
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste9g01587 9 16112876 16114475 Pste9g01587 9 16112876 16114475 ECH