Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste9g01496 GTTGGTTTTATCAATCTGATGGAGGAAAATCTACCTCCCGGATTCAGGTTCCATCCTACAGATGAAGAGCTCATCACATGTTATCTTACAAAGAAGGTCTCTGATTCTAGCTTCACATCTAAAGTTATAGCAGTTGTTGATCTCAACAAATCTGAACCTTGGGACCTCCCAGGTAAGGCCTCAATGGGGGAGAAAGAATGGTACTTCTTTAACTTAAGAGACCGAAAGTATCCAACTGGACTTCGAACAAATCGAGCCACTGAATCAGGCTATTGGAAAACCACAGGGAAGGATAAGGAAATTTTTCGTACTGGGGTTTTGGTAGGAATGAAGAAAACCCTAGTCTTTTATAAGGGTAGAGCTCCACGGGGAGAGAAAAGTAATTGGGTCATGCACGAATATAGGCTAGAAAACAAGCACCACTTTAGACCTTCCAAGGACGAATGGGTGGTTTGCAGGGTTTTCCAAAAGAGCTTGCAAGTGAAAAGACAACAGCAAACACCCTCCTCACAACCCGAGTCTCCATGTGACACTGCCTCAATGGTCAACGAATTTGGAGATGTTGAGCTTCCTAATCCAAATAGCATTGCAAATTCATCAGGCGGACTCACTAACAGCATTTCGGGACAAACTTTTAATTCTGATCTCAGTAATAGTGTTAACACAAATATGAACTTGAGCATGAATTGGCCAGTGGCAAGTGAGGTTCTGGTTCCCACCCTTCCATCACTCCCATGGCCTTCTGGGTTGCTAAATCCAACTATTTCTGGAAATTCTTTGCTGATCAAGGCATTGCAACTTAGGAGTTATCAACAAAGAGAAGTATCAGCAGCACCGGTTGCAGCTACAGATAATTTTGCATCATATATGCCTCAAGGAGTTTCCCATGTTGGAACTGACCTAATTTCAAATCTCACTGCTCTTTCATCTAAAGTTTTAGAATATATTCCACAACAGCAACAACAGGAGCAACCATTCAACTTGGACTCCATTTGGTGAATTTGTTTAAATCATGAAGCTAACATAGTACTATATATGTAACTACCCTCCCATTCCATAAATAAAATGGTACCATTTCCAAAC 1083 0.4137 VGFINLMEENLPPGFRFHPTDEELITCYLTKKVSDSSFTSKVIAVVDLNKSEPWDLPGKASMGEKEWYFFNLRDRKYPTGLRTNRATESGYWKTTGKDKEIFRTGVLVGMKKTLVFYKGRAPRGEKSNWVMHEYRLENKHHFRPSKDEWVVCRVFQKSLQVKRQQQTPSSQPESPCDTASMVNEFGDVELPNPNSIANSSGGLTNSISGQTFNSDLSNSVNTNMNLSMNWPVASEVLVPTLPSLPWPSGLLNPTISGNSLLIKALQLRSYQQREVSAAPVAATDNFASYMPQGVSHVGTDLISNLTALSSKVLEYIPQQQQQEQPFNLDSIW 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste9g01496 332 Pfam No apical meristem (NAM) protein 12 136 IPR003441 GO:0003677|GO:0006355
Pste9g01496 332 Gene3D NAC domain 20 161 IPR036093 GO:0003677|GO:0006355
Pste9g01496 332 ProSiteProfiles NAC domain profile. 11 157 IPR003441 GO:0003677|GO:0006355
Pste9g01496 332 FunFam NAC domain-containing protein 100-like 20 161 - -
Pste9g01496 332 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 7 214 - -
Pste9g01496 332 SUPERFAMILY NAC domain 6 157 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste9g01496 Pste-Chr9 14684839 14686991 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste9g01496 7 332 NAC Transcription Factor Family AT3G18400 57.692 2.67e-111 324
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pste9g01496 NAM 6.4e-40 No_clan