LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste9g01478	ATGAATATTGGTGAAGAAGATAATGAAAGCGGTGGGGAAGACAATCGATCTACTTCTCGTATGGATAGTTTATTACATGAAGAGCAATCCTTTTTGTCAAATTTCATACAAGAGTTTGGCAATACCAAAGTGCCTAGTCAAGGGGTTGAAGGTGTTCAAGTGAGCCAAGTAGAGTTAATGCAGTCAGAATGTATTGTGAGTAAAGATGATGGTGCTAGTTCTACCGTTTTGGAAGCAATAATAGCTATCAATCCTATGGTTAATGCATTTGTGCTAGAAAAGGGTAGTGAATTATGGTGCTTTGCACTTTCTTTCATAGAGAATAAACGCAAAGGGCGCGTAGAGAATTTGCATGTTGCACTGCTGACTGTATCACTTCCCCTCAGTGGCACAACATTCTTTGAAGGGCTTATTCATCCAAAATTTCTCAGAATTACTTTATTTTACTCCTTTGTTAATATCCATTTCTGTTGTGATTCTCGGCATGACATATGTTTTGCCACATCAGTATTTATGAAAAATCCCAATGGCCCTGCAACGTTTAGCAATTACCTCATGAGAATGGGGTGTGGTCTCTTTGAGTGCTGCTTCACTAGCACTTATTCTGACAAATTTTCAAAGCAGAGTAAGTGGCGAATCTTGCCCTACAAGAAACTTGCAAAAGTTACAAATAATTTTGACCAATCTCATTGTCTAGGAAAGAGAGGCTTTGCCACTGAATATTATGGAAAACTTGAGGATGGGCGTGAGATTACGATCCAGTGCTTTAACGAAGACAAGCACCACATATTGCAACAGTTTATCAAAGAAACATCTATCCTAAATTACTTGCCTCACAAAAATATTGTTTCAATTTATGGGTGTGCTTCTAATCATGACGAATCCCTGCTAGTGCATGAATACCTATCCAATGGCAATCTTGCTGCTCATCTTCAAAGTGAAATATCTGGAAGCAGCACACTACCTTGGCTGACTCGATTGGATATAGCCATTGATATTGCAAATGCATTGGACTATCTTCACTATTATGGCATCATCCACCGCAATGTGAAGTCCAGCAATATTCTCCTGGACGAGAACTATTGTGCTAAAGTTGGTAATCTTCACTTATCACGGAAACTTCCTGAAGGAGTTCCTGTTGACACCATCCATGTTACTAGTGATAGAGTAGGGTCAGGTGGTTATATAGATCCAGAGTATTTGATAAAAGGCAGGCTTAGCATAAAAAATGATGTTTATAGCTTTGGAGTGGTGTTGTGTGAACTTCTATCATCAAAGCTGGCAAAAAATTTGGTTCTGAATGAAGAGGATCTTACTACCACTTTAAGCAGAAAAATTGAAAATCAAGTTTTGGTGGAGCTGTTGGATCCAAGACTTGGCTTCCAATCCAACCTTAAGATCAAGCAAATGATGACTGCTACATCCAACCTTGCACTTCTATGCATGAAATGTCCACAAGAAATAAGGCCAAATATGGAACAAGTGCTAGAGATGCTCAATGGCATAAAGCAAGGGAGATATGAAATAAACGCTACAAAAGCTTTGAAAATCTTCCACAATGCTGAACTTGAAGAAGCTACTAACCATTTTGAGACTTGCCTTGGAAAGGGAGGGTATGGCACCGTCTACTATGGAAAACTTCAAGATGGACGAGAGGTTGCAATAAAATGTTTTCATGACGAAAGTGAGACAGAAAAGACCATTAAGCAATTCATGAAAGAAACTGAGATATTAAATCTGTTGCACCATAGAAATCTGGTTTCATTTTATGGCCGCACTTCTCATCATAGTAACAAACACATGATAGTGTATGAGTACATCTCCAATGGAACTCTTTCTAAACATCTTCATGAATCTTCCTCTAATAAATTACCATGGCATACTAGATTGAAGATTGCCATCGAAACTGCGAGTGCCTTGGTATATCTTCATGACTCAGGTATCATCCACCGTGATGTGAAAGGGAGTAATATACTGTTGGATGAAAATTTTGCTGTTAAAGTAGCAGATTTTGGATTTTCACGGTCTCTTCCAGATTATGTTACCCATGTTTCCACTATTCCAGTAGGAACTCGTGCTTACATAGATCCTGACTACTACGAATCTGGTAGGGTCAGTGACAAAAGTGATGTCTATAGTTTTGGGGTGGTCTTGCTTGAACTCATATCATCCAACCCCCCATGTTTAATGGAAGGCTCAGATTATGTTACTCTTGCACAGTTTGCAAAGAGAAAAATCTTAAACAAGGAATTAAACGCAGTAGTGGATCCAAGTTTTTGGTTTGGTGTTGATGAAAGCATGATGGAAATGATAATAGCAGTGGCAGAGTTGGCATTTCAGTGTGTGCAGTGTCCCAAGGAACTCAGACCATCCATGAAACAGGTGCTAGAGACCCTAGAGGGCATCAGGAAAGGAACATGGGGATTCAACCAGATAACATAGTCTTTATTCATTCTACCAAACCATTCCTTTGGTTTGTGGTCTAGTAGCTGGTTTTCCTCATTGAAAAGAGATGGTATTTTTCTGTAGAGGTTAGCCATGCATAATAGAAAATGGTGTGCAGGTGAAGGATTACGATGGAAAGAATGTATCTAGCCATGAGATCGCTTGCTGTATTTTACTTGTATATTTAGAGTGTATCTTCTAGTTAGATTACGCCTTCTGAGGCATGTTGAACGCGAATCCTTATCTCACATTGGACTCGCCTTCAACGTAATTTAACTCCAATATTTTTTAATGAAGCAAAGTATATTCAAA	2757	0.3888	MNIGEEDNESGGEDNRSTSRMDSLLHEEQSFLSNFIQEFGNTKVPSQGVEGVQVSQVELMQSECIVSKDDGASSTVLEAIIAINPMVNAFVLEKGSELWCFALSFIENKRKGRVENLHVALLTVSLPLSGTTFFEGLIHPKFLRITLFYSFVNIHFCCDSRHDICFATSVFMKNPNGPATFSNYLMRMGCGLFECCFTSTYSDKFSKQSKWRILPYKKLAKVTNNFDQSHCLGKRGFATEYYGKLEDGREITIQCFNEDKHHILQQFIKETSILNYLPHKNIVSIYGCASNHDESLLVHEYLSNGNLAAHLQSEISGSSTLPWLTRLDIAIDIANALDYLHYYGIIHRNVKSSNILLDENYCAKVGNLHLSRKLPEGVPVDTIHVTSDRVGSGGYIDPEYLIKGRLSIKNDVYSFGVVLCELLSSKLAKNLVLNEEDLTTTLSRKIENQVLVELLDPRLGFQSNLKIKQMMTATSNLALLCMKCPQEIRPNMEQVLEMLNGIKQGRYEINATKALKIFHNAELEEATNHFETCLGKGGYGTVYYGKLQDGREVAIKCFHDESETEKTIKQFMKETEILNLLHHRNLVSFYGRTSHHSNKHMIVYEYISNGTLSKHLHESSSNKLPWHTRLKIAIETASALVYLHDSGIIHRDVKGSNILLDENFAVKVADFGFSRSLPDYVTHVSTIPVGTRAYIDPDYYESGRVSDKSDVYSFGVVLLELISSNPPCLMEGSDYVTLAQFAKRKILNKELNAVVDPSFWFGVDESMMEMIIAVAELAFQCVQCPKELRPSMKQVLETLEGIRKGTWGFNQIT	813

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste9g01478	813	MobiDBLite	consensus disorder prediction	1	20	-	-
	Pste9g01478	813	FunFam	Wall-associated receptor kinase 3	607	813	-	-
	Pste9g01478	813	SUPERFAMILY	Protein kinase-like (PK-like)	512	803	IPR011009	-
	Pste9g01478	813	FunFam	Putative leucine-rich repeat receptor-like serine/threonine-protein kinase	302	512	-	-
	Pste9g01478	813	SMART	serkin_6	528	797	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pste9g01478	813	SMART	serkin_6	226	499	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pste9g01478	813	Pfam	Protein tyrosine and serine/threonine kinase	530	798	IPR001245	GO:0004672\|GO:0006468
	Pste9g01478	813	Pfam	Protein tyrosine and serine/threonine kinase	232	499	IPR001245	GO:0004672\|GO:0006468
	Pste9g01478	813	FunFam	LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 1.2 isoform A	198	301	-	-
	Pste9g01478	813	ProSiteProfiles	Protein kinase domain profile.	226	502	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pste9g01478	813	ProSitePatterns	Protein kinases ATP-binding region signature.	534	556	IPR017441	GO:0005524
	Pste9g01478	813	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	648	660	IPR008271	GO:0004672\|GO:0006468
	Pste9g01478	813	ProSiteProfiles	Protein kinase domain profile.	528	802	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pste9g01478	813	Gene3D	Transferase(Phosphotransferase) domain 1	302	504	-	-
	Pste9g01478	813	SUPERFAMILY	Protein kinase-like (PK-like)	203	499	IPR011009	-
	Pste9g01478	813	Gene3D	Transferase(Phosphotransferase) domain 1	607	807	-	-
	Pste9g01478	813	PANTHER	LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4	515	806	IPR044652	GO:0004672
	Pste9g01478	813	Gene3D	Phosphorylase Kinase; domain 1	505	606	-	-
	Pste9g01478	813	Gene3D	Phosphorylase Kinase; domain 1	198	301	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste9g01478	Pste-Chr9	14415593	14427446	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pste9g01478	515	803	Receptor kinase-like Gene Family	AT1G25390	51.525	2.80e-87	288

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_WAK_LRK10L-1	Pste9g01478		PK_Tyr_Ser-Thr	3.6e-47	CL0016