Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste9g01448 CAAAACAAAAACCCAGAAGAAACAGAAAACCTAGGACATTGTAAATGGGCATCAAGGATCTTCTCAGGTTCATGAAACCTTACATTGAATCTGTCCACATCAAGAAGTACGCTGGAAAACGGGTGGGTATAGATGCGTATTCATGGCTTCACAAAGGGGCTTATTCATGTAGTATGGAGCTTTGTTTGGATTCTGATAGTGAAAGGAAGAAAAGAAGGGCTAATCGAGAATTGGCAATGGCGAAGCTCAAAGAAGGGAATGTTGGTGCAGCTTCAGAGCTCTTCCAGAGAGCTGTGAATATTACCCCCGTTATGGCGCATAAGCTAATTCAGACCCTGAAATCAGAGAAGATTGAGTTCGTTGTAGCTCCATATGAAGCAGATGCTCAGTTAGCGTACTTGTCTCACCTTGGGATAGAGAATGGTGGAGTTGCAGCAGTGATCACAGAAGATAGTGATCTGATAGCATATGGCTGTCCAGCTATTATTTTTAAGATGGACCGTCATGGGAATGGTGAAACAATACAGTTAGAGAAAGTGTTTTCTGCTGATTCTGGTAGGCCTTCTTTTCGGAGTTTCAACCTGAAACTCCTCACAGGTATGTGTGTCTTAGCTGGCTGTGATTTTCTTCCATCTGTTCCTGGAATTGGTATTGTCCGAGCTCATGCTTTAGTTTCCAAGTATCGGAATCTAGATCGTATCTTGTCTGTTCTTAAGATTGAGAAAGGTGAACAAATGCCTGAAGATTATGCCAAATCCTTTCAAGAGGCTGTTGCAGTTTTTCAGCATGCTCGAATATATGATGGCAATGCTAAACAGCTCAAGCACATGAATCCTCTTCCACAAAATTTTCTTGAGTCACTTGATGGAAAACTTGATTTCTTGGGACCAGAAATTCCTCCATCTATAGTCACAGCAATAGCTGAAGGAAACTTGAACCCATCAACTAAGGAAGCCTTTGATAATTCTGAATGTTCTAGATTTCCTCTACACCCCGTTGATCTCCAAAGCATTGATCAAGTCCGGAAAGCCGAAGTTCCTGCACCATCTAGACAGGAGAATACCTTTTCAATCATTGCCTCCCAATACACCAGAGAAAATAGTAAAGATAAGTATTCTGATGAAGCATTGATACTTCAGAAACTAATCATGCCATTGGTAAAAAATGTAAAAGAAGAAAAGATCATTATGCCTGAAGACATTCCTTTTAAGGTTCCTGACAACAATCCGTTCAGGATAAGAAAAAATGAGGAGACATGTCAGACCAAGGACACGGCTGAAAAGGTTTTTTTTGCAAGCAGCATGGAATATACTGACTCATGCATATCTCCTGATAACTTTGAAGAGGGGTCAGATGAGAATCTCTCAAGGAAAAGGAAATTTCAGAAGATTTGCTCAAATAAAGTTGAAGCCATTCATGAACTGGTTTCAGGAGTGACTGAAGTAGAAAAACCTGATATTCTATTCATGGCTGCGGAATCCCCAGAAAGTATAAATTCTGAGACTAATAAAATTGCTAATTTGAAAGGAAGAAGTGAAAGTAACAAGAAATCCAAGAGAAGCAACAGCAAGAAAACGGGGAGTAACAACAGAACTCTTTTGAATTTCTTTTCTAGAGTGTAA 1622 0.3995 MGIKDLLRFMKPYIESVHIKKYAGKRVGIDAYSWLHKGAYSCSMELCLDSDSERKKRRANRELAMAKLKEGNVGAASELFQRAVNITPVMAHKLIQTLKSEKIEFVVAPYEADAQLAYLSHLGIENGGVAAVITEDSDLIAYGCPAIIFKMDRHGNGETIQLEKVFSADSGRPSFRSFNLKLLTGMCVLAGCDFLPSVPGIGIVRAHALVSKYRNLDRILSVLKIEKGEQMPEDYAKSFQEAVAVFQHARIYDGNAKQLKHMNPLPQNFLESLDGKLDFLGPEIPPSIVTAIAEGNLNPSTKEAFDNSECSRFPLHPVDLQSIDQVRKAEVPAPSRQENTFSIIASQYTRENSKDKYSDEALILQKLIMPLVKNVKEEKIIMPEDIPFKVPDNNPFRIRKNEETCQTKDTAEKVFFASSMEYTDSCISPDNFEEGSDENLSRKRKFQKICSNKVEAIHELVSGVTEVEKPDILFMAAESPESINSETNKIANLKGRSESNKKSKRSNSKKTGSNNRTLLNFFSRV 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste9g01448 525 CDD H3TH_FEN1-like 186 253 - -
Pste9g01448 525 SMART xpgineu 99 168 IPR006086 GO:0004518
Pste9g01448 525 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 180 307 IPR036279 -
Pste9g01448 525 Pfam XPG N-terminal domain 1 46 IPR006085 GO:0004518
Pste9g01448 525 CDD PIN_EXO1 1 166 IPR044752 GO:0046872
Pste9g01448 525 Gene3D - 52 170 - -
Pste9g01448 525 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 183 198 IPR006084 -
Pste9g01448 525 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 24 38 IPR006084 -
Pste9g01448 525 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 98 115 IPR006084 -
Pste9g01448 525 FunFam exonuclease 1 176 249 - -
Pste9g01448 525 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 1 37 IPR006084 -
Pste9g01448 525 SMART xpgn3 1 64 IPR006085 GO:0004518
Pste9g01448 525 SUPERFAMILY PIN domain-like 2 193 IPR029060 -
Pste9g01448 525 Gene3D - 177 249 - -
Pste9g01448 525 Gene3D - 1 51 - -
Pste9g01448 525 MobiDBLite consensus disorder prediction 485 516 - -
Pste9g01448 525 Pfam XPG I-region 102 193 IPR006086 GO:0004518
Pste9g01448 525 SMART HhH_4 180 213 IPR008918 GO:0003677|GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste9g01448 Pste-Chr9 13948373 13952983 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste9g01448 53 273 Core DNA Replication Machinery Family AT5G26680 26.316 5.98e-08 53.1