Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste9g01440 TATCCATCTATCGATACACTTTAATTTCAATCCAATTCCCAATTTTCGAATCCACACTTTCTCTCTCTACTATGGAGCCATCCTCGATCTCTCAATCGCCAGCTCCGCCAGCCACCGCCGTCCCCTTCCCTGCGGAAACCAACGACCACCTTCCACCACCCATTCCCCAGCAACCTCCCAACCACCCACCCTATGCTGACATGATATTAAGTGCAATCGAGGCACTGAAGGAGAAAGAGGGTTCGAGCAAGAGGGCCATAGCCAAGTATATCGAGCAGGTATACAAGGAGCAGCTTCCACCGAACCACTCCACCCTGTTGACTCAACACTTGAATCGTCTCAAGAACACTGGAGAGTTGGTAATGCTAAAAAAATCGTATGCTTTGCCTAGATCTGTAGCTGGGGATCTGGTGCTGCCTGCAGGACCTCCTTCGGGCTCTCCCAGGCCCAGGGGCCGGCCTCGCAAAGCCCAGACACCAGTCCAGACCACAGGCCTGCAACCCCAGGCAGAAAATGTTATTCAGCAGAATGCTGAGCCCGTGTGGGCTGCTCTTGGACTAGCGGACGAGCCCGTGCAAACCGAGGGAGTCAAGAAGCGTGGGCGGCCCAAGCAAAGTGGGAGCGGAGGGGTGGGTCCAGCCCCGAGGGGCCGTCCTCCCGGGTCAGGGAAGAAGCCGGGCCGTCCTCCAAAGGCTAAAACGGAGACAGATGTGGGTGGTTCAACGGTGGGCAAGAGACGCCCAGGCCGCCCACCCAAGAACCAGACACAAGCAACTCAAATTCCCTTTGCTCCAGCGGTCGGTGCAGAGCCTCTGCCTCAGCTACCACCTGCTACTGCTGCTCATGACCACACAGTTCTTGGGCCCAGAGCGCGTGGACAGCCAAAGAAGTATGCTGATGAGACATTTGGTCATGGCCGAGGCAGGGGTCGTGGCCGTGGCCGTGGCCGTGGCCGCGGAAGAGGACGCGGCAGAGCACGTGCCACATTTTCTCCTCTGCCCACAAAACCTGGGGCAAGGCCCGTCGGCCGCCCTAAGAAGGGGTCAACTTCTGATAGTACTTCTAAAGATGCTGTCAATGAAGCTCTCAGGATGAAGCTTGAATACTTTCAATTAAGAGTAAAGGATTCTCTTGCAATACTTAAGCCTCATTTTAACCATGAAAGCTCAATCTCTGCAATTGCCGCTATTCAAGATTTGGAAGTCCTGGGAACAATGGACCTTAATGCACCACTAGGGGATGATGAAACGCTTGCACATCAAGAGGAGGTGCCACAAGCACAGCCATCAATGCAGCAGCAGCAGCAGCAGCAGCAGCCAGCCCAACAGCAGCAGCAGTCACCACAGCAACACTTAGCACCACAGCAACTGCAGCCACAGCCATCGATGTTTCAGCAAACATATGCCCCGTTTCATCTGCCACAGTTCCACCACCATCAGCCACCACTGCCATTCCAGCAGCAGCAGCAGCAGCCACAGCCACCTCAGTTATTCCAGCACCCGGCACAGGCTCCACACCACCAGCAGTTTCATCCTTAGGAATCAGGCCCAGGCTAGAAAGAATTCAATGGTCCTCAATTGGATAATGAAGCTAGGAAGTATTACATGGTCTTAAATTTGGTTATGAACAAGTGTTTTAACAAGGCACATGAGGGGTAACAGATTTGTAAAGCGAGTAGGCAGTAGCAGAACTGATTTTTCGTTGAGTGAATCGATTGTTCATTTAGTTTGTTGTTGTGCACTGTTCTAGATTGACCCCCTGAAGTTTTAGATTTTAGTGTACTGATGATTATGTTATTCAAGTAATATTTGTTTGACTTTGGAAGCTTTAGATTATTAGTGACATTGTTCATGTCGGTCTTTTTAATATTATCCCACCATTTTTTGTTGGAA 1892 0.5153 MEPSSISQSPAPPATAVPFPAETNDHLPPPIPQQPPNHPPYADMILSAIEALKEKEGSSKRAIAKYIEQVYKEQLPPNHSTLLTQHLNRLKNTGELVMLKKSYALPRSVAGDLVLPAGPPSGSPRPRGRPRKAQTPVQTTGLQPQAENVIQQNAEPVWAALGLADEPVQTEGVKKRGRPKQSGSGGVGPAPRGRPPGSGKKPGRPPKAKTETDVGGSTVGKRRPGRPPKNQTQATQIPFAPAVGAEPLPQLPPATAAHDHTVLGPRARGQPKKYADETFGHGRGRGRGRGRGRGRGRGRGRARATFSPLPTKPGARPVGRPKKGSTSDSTSKDAVNEALRMKLEYFQLRVKDSLAILKPHFNHESSISAIAAIQDLEVLGTMDLNAPLGDDETLAHQEEVPQAQPSMQQQQQQQQPAQQQQQSPQQHLAPQQLQPQPSMFQQTYAPFHLPQFHHHQPPLPFQQQQQQPQPPQLFQHPAQAPHHQQFHP 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste9g01440 488 SMART AT_hook_2 265 277 IPR017956 GO:0003677
Pste9g01440 488 SMART AT_hook_2 124 136 IPR017956 GO:0003677
Pste9g01440 488 SMART AT_hook_2 199 211 IPR017956 GO:0003677
Pste9g01440 488 SMART AT_hook_2 173 185 IPR017956 GO:0003677
Pste9g01440 488 SMART AT_hook_2 221 233 IPR017956 GO:0003677
Pste9g01440 488 SMART AT_hook_2 315 327 IPR017956 GO:0003677
Pste9g01440 488 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 37 107 IPR005818 GO:0000786|GO:0003677|GO:0006334
Pste9g01440 488 MobiDBLite consensus disorder prediction 399 445 - -
Pste9g01440 488 MobiDBLite consensus disorder prediction 13 39 - -
Pste9g01440 488 MobiDBLite consensus disorder prediction 270 284 - -
Pste9g01440 488 MobiDBLite consensus disorder prediction 133 152 - -
Pste9g01440 488 MobiDBLite consensus disorder prediction 111 333 - -
Pste9g01440 488 PRINTS AT-hook-like domain signature 313 323 IPR017956 GO:0003677
Pste9g01440 488 PRINTS AT-hook-like domain signature 124 134 IPR017956 GO:0003677
Pste9g01440 488 PRINTS AT-hook-like domain signature 187 198 IPR017956 GO:0003677
Pste9g01440 488 MobiDBLite consensus disorder prediction 1 41 - -
Pste9g01440 488 MobiDBLite consensus disorder prediction 457 473 - -
Pste9g01440 488 SUPERFAMILY "Winged helix" DNA-binding domain 32 109 IPR036390 -
Pste9g01440 488 Gene3D - 33 114 IPR036388 -
Pste9g01440 488 FunFam Histone H1.2 34 113 - -
Pste9g01440 488 CDD H15 41 104 IPR005818 GO:0000786|GO:0003677|GO:0006334
Pste9g01440 488 MobiDBLite consensus disorder prediction 399 488 - -
Pste9g01440 488 SMART h15plus2 35 102 IPR005818 GO:0000786|GO:0003677|GO:0006334
Pste9g01440 488 MobiDBLite consensus disorder prediction 285 300 - -
Pste9g01440 488 PANTHER HISTONE H1 15 231 - -
Pste9g01440 488 Pfam linker histone H1 and H5 family 38 100 IPR005818 GO:0000786|GO:0003677|GO:0006334
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste9g01440 Pste-Chr9 13820692 13827058 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste9g01440 44 108 Single Myb Histone (SMH) Gene Family AT1G49950 40.000 2.67e-06 47.4