LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste9g01391	AAGAGAGGAACCCAGAGAGAGAAAATAAAGATAGAAAGAAAGAAAGCTGATGGAAAAGCTGAAAGTTTAAAAGCAAGTTAAAAGAAAGCTGAGGAAACCGAAAGGAAGAAGAAAAAAGAAAGCAAAAATAAAAAGACCCTTTTATTTTTCCTTCTCTCTTCCTCTATCAATGTCCTCCTCCTAGGCCTTCTGTACCCCTCTCTCTCTCTCTCTCTTTTCACCCCAATGATCTCTATGATATGATCTCCTCTTCCACCTTACTTAATTCTATCACCAACATAGCCACAGACACAAACATAGGCACTCCTTGCTTCTCTTCTTAGGCCTTATTATCATACATACCACATCATCAAATCACTTCCCATAGAGTACCATGTTAGCCAATAACTTATCTCCATCGTCAGTTCCCACTTCTGAGCCTTTTCCCTGCACTGAAAATGGCACTGCCACCAATAAAAGGAAGAGAAGACCCGCAGGAACACCAGATCCAGATGCAGAAGTGGTATCCCTCTCCCCGAAGACTTTGTTGGAATCGGATCGTTATGTGTGTGAGATCTGCAACCAGGGGTTCCAGAGGGATCAGAACCTTCAGATGCATAGGAGGAGGCACAAGGTGCCATGGAAGCTATTGAAGAGGGAAACACCAGTGGTGAGGAAGAGAGTGTTTGTGTGTCCTGAACCAACTTGCTTGCACCATGACCCGTGTCATGCCTTGGGTGATCTTGTTGGAATTAAGAAGCATTTCAGGAGGAAGCACAGCAATCACAAGCAATGGGTCTGTGAAAGATGCTCCAAAGGCTATGCAGTGCAGTCTGATTACAAAGCACATCTCAAAACGTGTGGCACCCGGGGCCACTCCTGTGATTGTGGTCGTGTTTTCTCAAGGGTGGAGAGTTTCATCGAGCACCAAGATGCTTGCAACATGGGAAGGCTCAGGCCAGAATCTCAACCACTTCAACCATCTGCATGCCTTTCTAGGACAGCTTCAAGTCCAAGTCCTTCAAGTGAAACCAATTTCAGCACAGCTCCATGGCCAACAAGAATGATAATTCCAAAGCCAACAGAACCACCCACAATTTTCATGAATAACCCTACTGCTGCACTCACCACTGCTGAAACATCTTCCAAGAGCAACAAGTTCCACCCTAACTTGGATCTTCAACTCTCCACCCCCACCACCACCAACAACAACAACAACACATCAAATGTTGCAAACCCCATTGATGCTGCAATATCTACATCACTATCACCTAAGAGGGATCACCATGAGAACCATTCCACCCATTTGCAACTCTCAATTGGGTCATCAGATATGAGTGAGAAAAATGAATCAAACAGGAACTCATCAGAGAAGAGCAGCAACAGCAACAACGAGAAGCAGTCCAATATGGCCTTGTTGAGGGTTCAAGAGCAAGCAAGGGAGCACTTGAGGATTGCCATGGCAGAGAAAGCATATGCTGAGGAAGCAAGGAAACAAGCGAAGAGGCAGATTGAACTTGCGGAACAAGAGTTCACAAACGCCAAAAGAATAAGACAACAAGCACAAACGGAACTTGACAAGGCCTACGCCTTGAAAGAACATGCAATGAAGCAAATCAACTCAACCATGCTCCAAATCACTTGCCACGCTTGCAAACAACAGTTCCAAGCTCGAAATGCAACTCCCGACGAGAATTCCTTGGTGTTGAGCTACGTGTCTTCTGCTATTACCACAGAAGGAGGAGAAGTAGACAACGATAATGCAAAAGATCATGGCAAAGACAACAACTAACTCTACTAAATTAGAGGGAGATCATCATCTTCTTCTTCATCATCATCATCCTCTTAAGTCTATTCTGTATTTTATTTTTCTATGTTGTCCTCCTTTATGGGTTAATACTTAATACCCTTTTTCCATTTCAAGGCTAATATCTTTGTGAATTGGTATACCAAGTGAAGTGAAGGTGAGTGATGTTGATTATGTAAGTGGGATTATAATAGCACGGGATGGAGAAATTAAAGAGTGTAATATTAATTCTTCGTGTAACTTGCAGTTTATTGTGCCATGTTATTTGTTAATTAAATTTGGTATAAATGGAGACTATGATAAAA	2091	0.4285	MLANNLSPSSVPTSEPFPCTENGTATNKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETPVVRKRVFVCPEPTCLHHDPCHALGDLVGIKKHFRRKHSNHKQWVCERCSKGYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDACNMGRLRPESQPLQPSACLSRTASSPSPSSETNFSTAPWPTRMIIPKPTEPPTIFMNNPTAALTTAETSSKSNKFHPNLDLQLSTPTTTNNNNNTSNVANPIDAAISTSLSPKRDHHENHSTHLQLSIGSSDMSEKNESNRNSSEKSSNSNNEKQSNMALLRVQEQAREHLRIAMAEKAYAEEARKQAKRQIELAEQEFTNAKRIRQQAQTELDKAYALKEHAMKQINSTMLQITCHACKQQFQARNATPDENSLVLSYVSSAITTEGGEVDNDNAKDHGKDNN	465

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste9g01391	465	Coils	Coil	352	407	-	-
	Pste9g01391	465	Pfam	Zinc finger, C2H2 type	57	79	IPR013087	-
	Pste9g01391	465	MobiDBLite	consensus disorder prediction	194	220	-	-
	Pste9g01391	465	MobiDBLite	consensus disorder prediction	193	280	-	-
	Pste9g01391	465	MobiDBLite	consensus disorder prediction	1	44	-	-
	Pste9g01391	465	Gene3D	Classic Zinc Finger	119	195	-	-
	Pste9g01391	465	Gene3D	Classic Zinc Finger	35	97	-	-
	Pste9g01391	465	MobiDBLite	consensus disorder prediction	1	24	-	-
	Pste9g01391	465	ProSiteProfiles	Zinc finger C2H2 type domain profile.	57	79	IPR013087	-
	Pste9g01391	465	MobiDBLite	consensus disorder prediction	304	337	-	-
	Pste9g01391	465	SUPERFAMILY	beta-beta-alpha zinc fingers	56	154	IPR036236	-
	Pste9g01391	465	MobiDBLite	consensus disorder prediction	235	280	-	-
	Pste9g01391	465	MobiDBLite	consensus disorder prediction	293	337	-	-
	Pste9g01391	465	PANTHER	SERINE/THREONINE-PROTEIN KINASE RIO	20	387	IPR031140	-
	Pste9g01391	465	SMART	c2h2final6	134	161	IPR013087	-
	Pste9g01391	465	SMART	c2h2final6	98	128	IPR013087	-
	Pste9g01391	465	SMART	c2h2final6	57	79	IPR013087	-
	Pste9g01391	465	ProSitePatterns	Zinc finger C2H2 type domain signature.	59	79	IPR013087	-
	Pste9g01391	465	FunFam	protein indeterminate-domain 12-like	36	104	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste9g01391	Pste-Chr9	13061033	13064348	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pste9g01391	20	454	C2H2 Transcription Factor Family	AT2G01940	57.047	1.51e-153	442

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	C2H2	Pste9g01391		zf-C2H2	0.0044	CL0361