Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste9g01376 GTTGATGTTATTATGATGTGTTATTGTATTTGCCATTTTGCTTTGCTTCTCTAAAACACACACAGTAGTAGCCATATAGCCTTATAGCCATAACCTATCAAAATCACATCAACAAAATTCTCTCTCTTTTTTCACACCCTCCTTCCAAAGCCTTCCAAAGTCCCTTGCTTCTTCTTCTACTTCTTTCTGTGTCTTAAAGCTTTGTGTTTTGTTTTTTTGTTTCTCAATGGTTATGATGTCATGAAAGTAGCTGATTCACCTTATAGAAAGTGGTGGTGGTGGGAGTGATCAAGAGAGAGAGAGAGAGAGAGATTAGGATAGAGAAACACAAAAATGGAGTATGGAAGTGGGTCTCCGGGTGATCATCACCATGACGGTTCTTCTGATTCCCAGAGAAGGAAGAAGCGTTACCACCGTCACACAGCTAACCAGATTCAGAGGCTTGAATCGATGTTCAAGGAATGTCCACACCCAGATGAGAAGCAGAGGTTGCAGTTAAGTAGGGAGTTAGGCTTGGCGCCCAGACAGATCAAATTTTGGTTCCAGAACAGGAGGACTCAGATGAAGGCTCAACATGAGAGAGCTGATAATTGTGCGCTACGGGCCGAGAATGACAAAATACGCTGCGAGAACATAGCCATAAGGGAGGCCTTGAAAAATGTTATCTGCCCCTCTTGTGGTGGTCCTCCTATTAATGATGATTGTTATTTTGATGAACAGAAGTTGAGATTGGAGAATGCCCAACTGAAAGAAGAGCTTGATAGAGTATCTAGCATTGCAGCTAAGTACATTGGAAGACCAATTTCCCAACTTCCACCGGTTCAGCCTATTCATATATCTTCTCTTGACTTGTCAATGGGGAGTTTTGGGAGCCAAGGATTGGGTGGCCCTTCCCTTGATCTTGATCTTCTCCCAGGGAGTTCATCATCATCCCTGCCGAATGTGCCTCCTTTCCAACCCGCTTGTCTTTCGGACATGGACAAGTCCCTCATGTCTGACATTGCCTCAAATGCCATGGAAGAAATGATCAGGCTATTGCAAACAAATGACCCCTTGTGGATGAAAGGTGCTGATGGAAGGGATGTCCTTGATCTTGATGCTTATGAAAGAATGTTCCCCAAGGCTAATAGTCACCTGAAGAACCCCAATGTTCATGTTGAAGCTTCTAGAGATTCAGGAGTTGTAATTATGAATGGCTTAACTTTGGTTGACATGTTTATGGATCCAAGCAAGTGGATGGAGTTATTTCCCACCATTGTCACAATGGCAAGAACAATTGAAGTTATATCTTCCGGAATGATGGGGGGTCATAGTGGTTCATTGCAATTGATGTATGAGGAATTGCAAGTGCTTTCTCCTCTTGTTTCTACTAGAGAGTTCTACTTCCTGCGTTACTGCCAGCAAATTGAACAAAGCTTATGGGCAATAGTAGATGTTTCATATGATTTTCCTCAAGACAACCAATTTGCTCCTCAATTTCGATCCCATCGTCTTCCTTCTGGTGTCTTTATCCAAGACATGCCAAATGGATATTCCAAGGTTACCTGGATTGAACATGTAGAGATTGAAGATAAAACTCCAGTTCATAGGCTCTATAGAAACATTATTTACAGCGGCATTGCATTTGGAGCACAAAGATGGCTAACTACACTACAGAGGATGTGTGAAAGGACTGCTTGTTTAATGGTGACTGGAAATTCTACCCGCGATCTTGGAGGAGTGATTCCATCTCCTGAGGGCAAGAGGAGCATGATGAAACTTGCACAAAGGATGGTCACCAATTTTTGTGCAAGCATTAGTGCATCAGCTGGGCACCGATGGACAACACTCTCTGGGAGTGGAATGAATGAGATTGGAGTCAGAGTCACTGTGCACAAGAGCACAGACCCTGGCCAACCTAATGGTGTGGTGTTAAGTGCAGCCACCACCATTTGGCTCCCCATCCCACCACAAACTGTTTTCAATTTCTTCAAGGATGAAAAGAAAAGACCACAGTGGGATGTCCTTTCCAATAGCAATGCTGTGCAAGAGGTTGCTCATATAGCAAATGGTCCACACCCTGGTAACTGCATATCTGTGCTTCGAGCATTCAACACAAGTCAAAACAACATGCTGATCCTGCAGGAGAGCTGTGTGGACTCGTCAGGGTCCCTAGTGGTGTACTGTCCAGTGGATCTGCCTGCCATAAACATAGCAATGAGTGGAGAAGACCCTTCATACATCCCCCTCCTTCCCTCAGGCTTCACCATATGCCCTGATGGGCAAGGAGAGCAAGATGGTGGAGGAGCCTCTTCCAGCACAAGCACAAGCAGGATGATGGGGGGTTCAGGTGGCTCACTCATCACTGTGGCATTCCAAATCCTGGTTAGCAGCTTGCCATCTGCAAAACTCAACATGGAATCGGTGAACACTGTTAATAGCCTCATCGCCAACACTGTCCAACACATTAAGGCTGCCTTGAATTGTCCTAGTTCCTGATGCTTCTGTTTCTGCTTGTGCACTACTTTCCTTTCCCACCCCTTCCTTAAATATGCTTATCAGAAATGGTTCAGACCTGAGGCTACTTGTGCTGCTGGTATAATCAATGTGTGGGAGAAGTATTTTGGGTTAGTTGGGACTTCAATGCCCCCTCATCAAGCCTCATTATTTACTGCTCCAGCTGATGGTAGAGCTGTATTTTCCTTCAAAGCTTCTACTTTCATTACCAACTACCATTTTTTATTTTCTTTTATTTTAGAAACAACAAAACTATGCTTTGATATTTTGCATACTTGCTTTGGAACAAGAGATAGTAATAGTGATAGTAATAGTAGTTGTGGTCTTAGAAGAGGGAGTCAAGAACGCACCATATATGTACTTGGGGGTGTTTTTCTTCTCTACATTCC 2885 0.4374 MEYGSGSPGDHHHDGSSDSQRRKKRYHRHTANQIQRLESMFKECPHPDEKQRLQLSRELGLAPRQIKFWFQNRRTQMKAQHERADNCALRAENDKIRCENIAIREALKNVICPSCGGPPINDDCYFDEQKLRLENAQLKEELDRVSSIAAKYIGRPISQLPPVQPIHISSLDLSMGSFGSQGLGGPSLDLDLLPGSSSSSLPNVPPFQPACLSDMDKSLMSDIASNAMEEMIRLLQTNDPLWMKGADGRDVLDLDAYERMFPKANSHLKNPNVHVEASRDSGVVIMNGLTLVDMFMDPSKWMELFPTIVTMARTIEVISSGMMGGHSGSLQLMYEELQVLSPLVSTREFYFLRYCQQIEQSLWAIVDVSYDFPQDNQFAPQFRSHRLPSGVFIQDMPNGYSKVTWIEHVEIEDKTPVHRLYRNIIYSGIAFGAQRWLTTLQRMCERTACLMVTGNSTRDLGGVIPSPEGKRSMMKLAQRMVTNFCASISASAGHRWTTLSGSGMNEIGVRVTVHKSTDPGQPNGVVLSAATTIWLPIPPQTVFNFFKDEKKRPQWDVLSNSNAVQEVAHIANGPHPGNCISVLRAFNTSQNNMLILQESCVDSSGSLVVYCPVDLPAINIAMSGEDPSYIPLLPSGFTICPDGQGEQDGGGASSSTSTSRMMGGSGGSLITVAFQILVSSLPSAKLNMESVNTVNSLIANTVQHIKAALNCPSS 714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste9g01376 714 SUPERFAMILY Bet v1-like 214 447 - -
Pste9g01376 714 Pfam Homeodomain 23 78 IPR001356 GO:0003677
Pste9g01376 714 Gene3D - 9 94 - -
Pste9g01376 714 FunFam Homeobox-leucine zipper protein HDG1 9 96 - -
Pste9g01376 714 MobiDBLite consensus disorder prediction 648 662 - -
Pste9g01376 714 SUPERFAMILY Bet v1-like 467 706 - -
Pste9g01376 714 SMART HOX_1 21 84 IPR001356 GO:0003677
Pste9g01376 714 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 20 710 IPR042160 -
Pste9g01376 714 Coils Coil 128 148 - -
Pste9g01376 714 SMART START_1 222 446 IPR002913 GO:0008289
Pste9g01376 714 SUPERFAMILY Homeodomain-like 6 80 IPR009057 -
Pste9g01376 714 Gene3D - 223 448 IPR023393 -
Pste9g01376 714 MobiDBLite consensus disorder prediction 643 662 - -
Pste9g01376 714 MobiDBLite consensus disorder prediction 1 21 - -
Pste9g01376 714 ProSitePatterns 'Homeobox' domain signature. 55 78 IPR017970 GO:0000981|GO:0006355
Pste9g01376 714 CDD START_ArGLABRA2_like 217 445 - -
Pste9g01376 714 ProSiteProfiles START domain profile. 213 449 IPR002913 GO:0008289
Pste9g01376 714 ProSiteProfiles 'Homeobox' domain profile. 20 80 IPR001356 GO:0003677
Pste9g01376 714 CDD homeodomain 22 81 IPR001356 GO:0003677
Pste9g01376 714 Pfam START domain 223 446 IPR002913 GO:0008289
Pste9g01376 714 FunFam Homeobox-leucine zipper protein GLABRA 2 222 445 - -
Pste9g01376 714 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste9g01376 Pste-Chr9 12647430 12651598 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste9g01376 18 714 Homeobox Transcription Factor Family AT1G73360 66.856 0.0 937
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Pste9g01376 START 4.1e-46 CL0209
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste9g01376 9 12647430 12651598 Pste9g01376 9 12647430 12651598 ECH