Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste9g01338 TGACTGATGTGTCTGTGTATCTATCTCGCTCAAACTGTTTTTCTTTTTCTCTTTTCTAATTGTCGGGGTTTATTTGCATTTGGGCACATCTAGGATTTGATTCACTGGGGTTGGGGAGTCATTAGTTTGTGTTGAGAGGATTTTCCTATGATCCCGTTGGTTGAAAATGTCAATTTTTCATGTGATTAATGCTGATCCAACATTTTCCAGAACATCAACCAGTTGACTGACTGTTGTATAAAACTAGTGAAGGAGCTGGGGAAGATGGATAAATATGTTGAGGGAAACCGCGGTGATTATGAGCATGACATAGAAAATGAAGCTCTGTTGGATGGGAATGAGCAAATTGGAAGGTACTGGTCAGGGTTATCTGACAGAAACGTGTCTTATACAAAGCCACTTCTTGTGAAGCGGACTAACACCACTTCCCAGATTGCTATAGTTGGTGCCAACCTCTGCCCTATTGAAAGCCTTGACTATGAGGTTTTTGATAATGAAATCTTGAAGCATGACTGGAGGTCCAGGAAGAAGTATCAAATAATCCAGTATGTGGTGCTTAAGTGGGGTTTTGCTCTTCTTATTGGATTAGGAACCGGATTAGTTGGCTTCTTTAACAGTTTGGCAGTTGAGAACATAGCTGGTTTCAAGCTGCTTATGACCACCACCCTCATGTCCAAAAATAGATATCTTGAGGCCTTTTTAGCATATGCTTGTTCGAATATGTGTTTAGCTGCAGCTGCTGCTGCACTTTGTGCTTATGTTGCTCCAGCAGCTGCAGGCTCAGGCATTCCAGAGGTAAAAGCATATCTCAATGGCGTGGATGCTCACTATATATTGGCTCCAAGCACCCTTTTTGTAAAGATATTTGGTTCCATCCTTGGAGTTTCTGCTGGATTCGTGGTGGGCAAAGAGGGACCTATGGTACATACAGGTGCATGCATAGCTTCTTTATTGGGGCAGGGAGGATCTCGCAAATATCACTTGACATCCACTTGGCTTAGATATTTCAAAAATGACCGAGACCGACGAGACATGATTACTTGTGGTGCAGCTGCTGGTGTTGCTGCTGCCTTCCGTGCCCCAGTTGGTGGAGTCCTCTTCGCCCTTGAAGAGGCAGCTTCATGGTGGCGAAGCGCTCTTCTTTGGAGGGCATTTTTCACAACAGCAGTAGTTGCTATTGTTTTAAGAGTTGCAATTCAGTTTTGTGCCACTGGGAAATGTGGGCTATTTGGGGAAGGTGGTCTGATCATGTATGATGTTAGTTCAGTCAATATAACATACAGTGCTAGTGATATATTTGCTGTACTAGTTTTGGGAGCCATTGCTGGAATTCTTGGAAGCTTATATAATTACCTTGTAGATAAGGTTGTTCGGACATATAGCATCATCAATGAAAAAGGTCCAGCTTTGAAAATCTCTCTTGTTGTCACAATTGCTTTATTGACATCATGTTGCTATTATTTCTTGCCATGGATTGCGAACTGCATCCCCTGTCCTTCTGATTCAACAGTGAGCTGCCCCTCTATTAATGAGTCTGGAGAATACCAAAACTTCCAATGCCCACCAGGCTACTACAATGATCTTGCTTCACTTTTCCTAAACACCAACGATGATGCTATTCGTAATCTATTCAGCCCCAAGATAATCAAAGAGTTTCATATTTCCAGTTTGTTTATCTACTTTTCTACTATTTACTTTCTTGGGATAGTCACTTATGGTATTGCTATTCCATCTGGACTCTTCATTCCAGTGATCCTTGCTGGTGCTGCCTATGGCCGTCTAATGAGCCGGCTCTTTGAACCGATTGCCAAACTTGACAGGGGACTCTTTGCTCTACTTGGAGCTGCTTCCTTCCTTGGTGGCACCATGAGAATGACAGTTTCTATTTGTGTCATATTGCTTGAACTCACTAATGATCTCTTGTTACTTCCACTTGTGATGTTGGTTTTATTAGTCTCAAAAACAGTGGCTGACAGCTTCAACAAGGGTGTCTACGATCAAATACTTCATATCAAAGGACTTCCTTATTTGGAGGCTCATGCAGAACCTTACATGAAGAATTTAGTTACACGTGATGTTGTTTCTGGCCCATTAATAACCTTTTCTGGCATTGAAAAGGTTGGAAATATATTGCACGCTTTGAGTGCTACACGGCATAATGGGTTTCCTGTCATTGATGAGCCACCTTTCGTAGATTCACCAGAATTATGTGGGCTTGTGCTGAGGTCTCATTTACTAGTCTTGTTGAAGGAGAAGGTTTTTTTAAGAGACAGGGATTTTGCAGATCAAAGTATCTTTCAAAAAGTTTCTACTTTGGATTTTGGAAAGCCAGGATCAGGAAAAGGGATCAAAGTAGAGGATCTTGATATTGAAGGGGAAGAGATGGATATGTATGTTGATCTTCATCCCATAACTAACGGATCCCCTTACACCGTGGTTGAGACAATGTCACTTGCCAAAGCTGCTATTCTTTTCCGCCAACATGGACTCAGGCACATGTGTGTTGTTCCAAAGAGCCAAAGGAGACCTCCAGTTGTTGGGATTCTAACGCGCCATGATTTTATGCCAGAGCATGTTTTGGGGCTTTACCCTGATATCAAGCCTCAGAAACGGCAATGAGTGATCTGAATGAAAAAATATTCTTTCTTCAGTATTGAAGTGCTGAATTCATTAGTTGATCAAATATTTTTTATATACAGTACAGGGCAACAGTTATTCACAAAACATTTGAAGCAGAAATGTTGCTTGTTAAGATGTGGCTGGTGCATAGTTTTGATGCTTGATTTAGCAACTGTGTCCAGTGTCCTTCTATGGATTGTTAATCTCTTTTTGATGAAGTCCGTCTGATACTTCAAATAGACACTTTGAAACATAGTTGCAGTACAGGGTTAATATTTATCTCTTGTACATATTGTTTGTTTGCTTTTTTTTTAATAAAATGTCCGAAGCGGTTAGGGTCAGTTTAGTTTGAATCATGCCAGTGTTACCATACACAAACAGATGAATTAGAGCAGAATCAATATGTAACGTATTGTTTG 3038 0.4098 MDKYVEGNRGDYEHDIENEALLDGNEQIGRYWSGLSDRNVSYTKPLLVKRTNTTSQIAIVGANLCPIESLDYEVFDNEILKHDWRSRKKYQIIQYVVLKWGFALLIGLGTGLVGFFNSLAVENIAGFKLLMTTTLMSKNRYLEAFLAYACSNMCLAAAAAALCAYVAPAAAGSGIPEVKAYLNGVDAHYILAPSTLFVKIFGSILGVSAGFVVGKEGPMVHTGACIASLLGQGGSRKYHLTSTWLRYFKNDRDRRDMITCGAAAGVAAAFRAPVGGVLFALEEAASWWRSALLWRAFFTTAVVAIVLRVAIQFCATGKCGLFGEGGLIMYDVSSVNITYSASDIFAVLVLGAIAGILGSLYNYLVDKVVRTYSIINEKGPALKISLVVTIALLTSCCYYFLPWIANCIPCPSDSTVSCPSINESGEYQNFQCPPGYYNDLASLFLNTNDDAIRNLFSPKIIKEFHISSLFIYFSTIYFLGIVTYGIAIPSGLFIPVILAGAAYGRLMSRLFEPIAKLDRGLFALLGAASFLGGTMRMTVSICVILLELTNDLLLLPLVMLVLLVSKTVADSFNKGVYDQILHIKGLPYLEAHAEPYMKNLVTRDVVSGPLITFSGIEKVGNILHALSATRHNGFPVIDEPPFVDSPELCGLVLRSHLLVLLKEKVFLRDRDFADQSIFQKVSTLDFGKPGSGKGIKVEDLDIEGEEMDMYVDLHPITNGSPYTVVETMSLAKAAILFRQHGLRHMCVVPKSQRRPPVVGILTRHDFMPEHVLGLYPDIKPQKRQ 784
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste9g01338 784 Gene3D Clc chloride channel 91 589 - -
Pste9g01338 784 ProSiteProfiles CBS domain profile. 716 778 IPR000644 -
Pste9g01338 784 CDD CBS_pair_voltage-gated_CLC_euk_bac 603 769 - -
Pste9g01338 784 FunFam Chloride channel ClC3 91 415 - -
Pste9g01338 784 SMART cbs_1 720 771 IPR000644 -
Pste9g01338 784 SMART cbs_1 609 662 IPR000644 -
Pste9g01338 784 PRINTS Chloride channel signature 263 282 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Pste9g01338 784 PRINTS Chloride channel signature 168 185 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Pste9g01338 784 PRINTS Chloride channel signature 199 218 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Pste9g01338 784 PRINTS Chloride channel signature 520 536 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Pste9g01338 784 PRINTS Chloride channel signature 576 590 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Pste9g01338 784 PRINTS Chloride channel signature 488 508 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Pste9g01338 784 PRINTS Chloride channel signature 538 557 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Pste9g01338 784 SUPERFAMILY Clc chloride channel 79 592 IPR014743 -
Pste9g01338 784 Pfam Voltage gated chloride channel 156 570 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Pste9g01338 784 PRINTS Plant CLC chloride channel signature 73 81 IPR002251 GO:0005247|GO:0006821|GO:0016020
Pste9g01338 784 PRINTS Plant CLC chloride channel signature 284 292 IPR002251 GO:0005247|GO:0006821|GO:0016020
Pste9g01338 784 PRINTS Plant CLC chloride channel signature 440 456 IPR002251 GO:0005247|GO:0006821|GO:0016020
Pste9g01338 784 PRINTS Plant CLC chloride channel signature 298 308 IPR002251 GO:0005247|GO:0006821|GO:0016020
Pste9g01338 784 PRINTS Plant CLC chloride channel signature 316 323 IPR002251 GO:0005247|GO:0006821|GO:0016020
Pste9g01338 784 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 30 772 - -
Pste9g01338 784 Pfam CBS domain 721 766 IPR000644 -
Pste9g01338 784 SUPERFAMILY CBS-domain pair 593 767 IPR046342 -
Pste9g01338 784 Gene3D - 590 768 IPR046342 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste9g01338 Pste-Chr9 12074760 12083494 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste9g01338 1 782 Ion Channels AT5G49890 70.102 0.0 1081