LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste9g01336	GTGATAGCAAAAGATACACACACGAAATACGATTTGATTTGAATACACATTCATTTCCCTCGCAGTGAGAGTAGGGTTTGGTTTTTATCAGTTTTTCTCCACACAGGATAATGGAACAAAAAGCCAGTCAGGAATCGTCTAAATTCGCTTTCGATTTGAAGTGTGAGAAGGTTCTTGAAACAGTTGATCAATCAATCACATGCCCCACTCCACAAAAGAATGCGGAATCCCTAACCCTCCAATCCAGGGAGGAGCACCCCCACATTCCGGAGAAATATTATGTACTTGTGGATTTCTTTGGTGCAATGTGTTGTTCACTAAGGTTGCTGCATCTGCGCAAAAGGGCTCCAACTTTTTTAAATATTTGCAGCAAGGTTGAAGTGATTTCCAAGAGGAAGTTTTCCCATGCCCATCTTGCACAGATAAAGTATGTACTCCCTGAAATTGTATGTATAGATAAGGTGCTTGTTCATGATAAGAAAAGCTTGTGTATGGTGCCAGATATGAATATTACCTTAAAATTTGAAGTGCTAAAAGATAGATGTGATAAATCTGCCAATCTAGCTGTTCTTCGACACTTTAAATCCATGCTGATTGATTTTCTTGATAAACATCCTGAGGTTGTTGATATTCCAGAGGCTCTACTTCCAGAACCCTTTGGCAAAAAAACCTGTAGTTTGAAATGTGAAGTTTCTCACGTTGAAAAATTTATCGGTCAATCTCTGGATGTAAATTCTTCAATGGAACTTTCTTCAATTTCCAGTCAAACTAAAGTGTTGCCCGAGAAATTCCAATTGTATCAAACTCTTAGCGGACATTCTTCTCAGAAGAACCTTGACCAGGGAGAGAAGACTGAAAAGACTGACTGCTTTCCACTCACAAAAACTTCTCCATCATTTCGTTCATCTGATAGTCTGGATAATGGAGGAAGTGAAAAGGCACAGCAGAAAGAATTTTCACCAATATCTGATCACATGGCTAATCTGAACACAGAAAGAGGGGACCAGACAGAGGAACTGTTTTCTATGTCTTTTCAACCTGGTGTGACTAATACACCAGTACATACGATTCGTCCTCAACACTCAGTTACTTGCACTAAGTCTGAAAGTCCAGATATGAAAAATATATGCTGTGTTGCTGATAGTTTTATGACAGAGACACCTGCTCAGTCAGCACCTTTGAGATTATTGCCCATGTCTGATGTTAAGTGTCATGATGTGCCTACTCAAAAGTCAGCATCCTCTCATAAGCCAGCAAAAAGAGTGCTTGACTTTTCACTCATGGGGGACAATGATGAGGATTGCAATTCTTCTGGGTCTGTTTCTGTACCTCAGGAGGCAGAAGAGAGCCTTGGTTATTCTTTTAAGAAAACCAGCCAAAAGCAAGCTGGTTTAGATACAAGGCATAATAATAAATCTTCACCATTGCTGGACCTGGTTAATGTGATTCAATCTATCTTTCAATCTGTCCAAAGAATGCCAATCACCAAAGAGGAGCTGTTGCATAAGATACTTATGAATAGTTTGGATTTTGTTGAGATTAGAGAAGTTGAAGAACAGGTTGAGTCTTTGGAAAGGTTGGTGCCCGACTGGATCTGCAAGAAATTGCTTCCTGCTGGAGATACTATGTACTGCATCAATAAAGTGTCTGATGTAGAGTATATACGAACAAGGCTTTCTAACAACGAGATAGTTTGAGAGAAGGGGCTTTTAGCGACTGATAATGACAACAAATGGTTTTCCAGCAAGAATATTGTTTAAGACGAGGGGCTTTTACGGACCGATAATCACAACAAATGATTTATAATTTTTTGTTAATTTTTATTACGGTCTTTAATACGTAATTAGAGGTTGTATGTTTTCTTCATCTTCATGCATTTGTTTAATATAATGAAAA	1896	0.3861	MEQKASQESSKFAFDLKCEKVLETVDQSITCPTPQKNAESLTLQSREEHPHIPEKYYVLVDFFGAMCCSLRLLHLRKRAPTFLNICSKVEVISKRKFSHAHLAQIKYVLPEIVCIDKVLVHDKKSLCMVPDMNITLKFEVLKDRCDKSANLAVLRHFKSMLIDFLDKHPEVVDIPEALLPEPFGKKTCSLKCEVSHVEKFIGQSLDVNSSMELSSISSQTKVLPEKFQLYQTLSGHSSQKNLDQGEKTEKTDCFPLTKTSPSFRSSDSLDNGGSEKAQQKEFSPISDHMANLNTERGDQTEELFSMSFQPGVTNTPVHTIRPQHSVTCTKSESPDMKNICCVADSFMTETPAQSAPLRLLPMSDVKCHDVPTQKSASSHKPAKRVLDFSLMGDNDEDCNSSGSVSVPQEAEESLGYSFKKTSQKQAGLDTRHNNKSSPLLDLVNVIQSIFQSVQRMPITKEELLHKILMNSLDFVEIREVEEQVESLERLVPDWICKKLLPAGDTMYCINKVSDVEYIRTRLSNNEIV	528

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste9g01336	528	Pfam	DNA replication factor CDT1 like	53	115	IPR014939	-
	Pste9g01336	528	PANTHER	DNA REPLICATION FACTOR CDT1	21	523	IPR045173	GO:0003677\|GO:0030174\|GO:0071163
	Pste9g01336	528	Gene3D	-	429	526	IPR038090	-
	Pste9g01336	528	SUPERFAMILY	"Winged helix" DNA-binding domain	42	183	IPR036390	-
	Pste9g01336	528	MobiDBLite	consensus disorder prediction	254	283	-	-
	Pste9g01336	528	CDD	Cdt1_m	34	185	IPR014939	-
	Pste9g01336	528	SMART	CDT1_2	52	181	IPR014939	-
	Pste9g01336	528	Pfam	DNA replication factor Cdt1 C-terminal domain	432	495	IPR032054	-
	Pste9g01336	528	MobiDBLite	consensus disorder prediction	234	283	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste9g01336	Pste-Chr9	12049291	12053659	Dispersed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pste9g01336	439	522	Core DNA Replication Machinery Family	AT2G31270	45.238	5.94e-16	79.0

Showing 1 to 1 of 1 entries