Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste9g01308 TTCTCAGCATATGTAATCATTTTCACTTTCCAACCGGATGCACGGATAACGTTTGTCTTCATGTGATCCCCAGAGTTGGAATACTCCACAGAACAAGGAGCATCATTGATTGCTGCAAAGACCAACGACTTTAGTACTTCTCTCATTGTTGTGCTCCATTTTCAATAAACTCAGATTCTTCTATTCGATGACTGATGTGTCTGTGTAACTGTGTATCTATCTGGCTCATACTGTTTTTCTTTTTTCTTTTTTAGTTGTCATAGTTTATTTGCATTTGGGCACATCTAGGATTTGATTCACTGGAGTTAGGGAGCCATTAGTTTGTTTTGAGAGGATTTTCCTATGATCCTTTTTTTTGAAAAATGTCAATTTTTCATGAGATTAATGCTGAGCCAACACTTTCTAGAACATCAGCGAGTTGACTAACTGTTTTACCAAACTAGTACTATCTGCTGTAAATGTTGAAAGTTATGGTTGCCTCAATGATTTGCCAATCGTTTCTGCGGAGTATAGTCAAGGAAAACTTTATGAGTGTTGAATTTGCCATGGCATGATGAGCACACACATATCACATGCTTTAGATGGGGTTGTGCCTGCAGGTTCTGATAATACATATGCTATAAATTAGGTTCCTAACTTCCTATTATGACTCAAACAGGACAAGGAGCTGGGAAGATGGATAAAGATGTTAAGGTAAATGACGGTGATTATGAGCATGACATAGAAAATGAAGCTCTGTTGGATGGGAATGAACAAATTAGAAGGTACTGGTCAGGGTTATCAGACAAAAACACGTCTTATACAAATCCACTTCTTGTGAAGAGGACTAACACCACTTCCCAGATTGCTATAGTTGGTGCTAACCTCTACCCTATTGAAAGCCTTGACTATGAGGTTTTTGATAATGAAATATTGAACCATGACTGGCGGTCCAGGAAGAAGTATCAAATAATCCAGTATGTGATGCTTAAGTGGGGGTTTGCTCTTCTTATTGGATTAGGAACCGGATTAGTTGGCTTCTTTAACAGTTTTGCAGTTGAGAACATAGCTGGTTTCAAGCTGCTTATGACCACCACTCTCATGTCCAACAACAGATATCTTGAGGCCTTTTTAGCTTATGCTGGTTCCAATATGTGTTTAGCTGCAGCTGCTGCTGCACTTTGTGCTTTTGTGGCTCCAGCAGCTGCAGGCTCAGGCATTCCAGAGGTAAAAGCATATCTCAATGGCGTGGATGCTCACTATATATTGGCTCCAAGCACCCTTTTTGTAAAGATATTGGGTTCCATCCTTGGAGTTTCTGCTGGATTCGTGGTGGGCAAAGAGGGACCTATGGTACATACAGGTGCATGCATAGCTTCTTTATTGGGGCAGGGAGGATCTAGCAAGTATGGCTTGACATGCACTTGGCTTAGATATTTCAAAAATGACCGAGACCGACGAGACATGATTACTTGTGGTGCAGCTGCTGGTGTTGCTGCTGCCTTCCGTGCCCCAGTTGGTGGAGTCCTCTTCGCTCTTGAAGAGGCAGCTTCATGGTGGCGAAGTGCTCTTCTTTGGAGGACATTTTTCACAACAGCAGTAGTTGCTATTTTTTGTGCCACAGGGAAATGTGGGCTATTTGGGGAAGGTGGTCTGATCATGTATGATGTTAGTTCAGCCAATATAACATATAGTGCTAGTGATATATTTACTGTACTAGTTTTGGGAGCCATTGCTGGAATTCTTGGAAGCTTATATAATTACCTTGTAGATAAGGTTGTTCAGACATATAGCATCATCAATGAAAAAGGTCCAGCTTTCAAAATCTCTCTTGTTGTCACAATTGCTTTATTGACATCATGTTGTTATTATTTCTTGCCATGGATTGCGCACTGCATCCCCTGTCCTTCTGATTCAACAGTGAGCTGCCCCTCTATTAATGAGTCTGGAGAATACCAAAACTTTCAATGCCCACCAGGCTACTACAATGATCTTGCTTCACTTTTCCTAAACACCAATGACGATGCTATTCGTAATCTATTCAGCCCCAAGATAATAAAAGAGTTTCATGTTTCCAGTTTGTTTATCTATTTTTCTACTATTTACTTTCTTGGGATAATCACTTATGGTATTGCTATTCCATCTGGACTCTTCATTCCTGTGATCCTTGCTGGTTCTGCCTATGGCCGTCTTATGAGTCAACTCTTTGAACCAATTGCCAAACTTGACAGAGGACTCTTTGCCCTACTTGGAGCTGCTTCCTTCCTTGGTGGCACGATGAGAATGACAGTTTCTATTTGTGTCATATTGCTTGAACTCACTAATGACCTCTTGTTACTTCCACTTGTCATGTTGGTTTTATTAGTCTCAAAATCTGTGGCTGACAGCTTCAATAAGGGTGTCTATGATCAAATACTTCATATCAAAGGACTTCCTTATTTGGAGGCTCATGCAGAACCTTACATGAAGAATTTAGTTACACGTGATGTTGTTTCTGGCCCATTAATAACCTTTTCTGGCATTGAAAAGGTTGGAAATATATTGCACGCTTTGAGTTCTACACGGCATAATGGGTTTCCTGTCATTGATGAACCACCTTTCGTAGATTCACCAGAATTATGTGGGCTTGTGCTGAGGTCTCATTTACTAGTCTTATTGAAGGAGAAGGTTTTTTTAGGAGACAGGGATTTTGCAGATCAAAGTATCTTTCAAAAAATTTCTACTTTGGATTTTGGAAAGCCAGGATCAGGAAAAGGGATCAAACTAGTGGATCTTGATATTCAAGGGGAAGAGATGGATATGTATGTTGATCTTCATCCCATAACTAACGGATCCCCTTACACCGTGGTTGAGACAATGTCACTTGCCAAAGCTGCTATTCTTTTCCGCCAACATGGACTCAGGCACATGTGTGTTGTTCCAAAGAGCCAAAGGAGACCTCCAGTTGTTGGGATTCTAACTCGCCATGATTTTATGCCAGAGCATGTTTTGGGGCTTTACCCTGATATCAAGCCTCAGAAACGGCAATGAGTGGTCTGAATGAAAAAATATTCTTTCTTCCGTATTGAAGTGCTGAATTCATTAGTTGATAAAATATTTTTTATATACAGTACAGGGCAACAATTATTCACAAAACATTTGAAGCAGAAACGTTGCTTGTTAAGATGTGGCTGCTGCATAGTTTTGATGCGTGATTTAGCAACTGTGTCCAGTGTCCTTGTATGGATTGTTAATCTCTTTTTGATTAAGTCCGTCTGATACTTTCAAATAGACACTTCGAAACATAGTTGCAGTTCAGGTTAATATTTATCTCTTGTACATGTTTGTTTGATTTTTTTGGATAAAACATTTTGATGATTTTTTGTTAGCGAGGCAAATGTACCGTTTAGACTACAATGTTCGAGACCATACACATGAACAAATGAACTAGAGTAGAATCAGTATGTAACGTATTGTTTG 3438 0.3982 MTQTGQGAGKMDKDVKVNDGDYEHDIENEALLDGNEQIRRYWSGLSDKNTSYTNPLLVKRTNTTSQIAIVGANLYPIESLDYEVFDNEILNHDWRSRKKYQIIQYVMLKWGFALLIGLGTGLVGFFNSFAVENIAGFKLLMTTTLMSNNRYLEAFLAYAGSNMCLAAAAAALCAFVAPAAAGSGIPEVKAYLNGVDAHYILAPSTLFVKILGSILGVSAGFVVGKEGPMVHTGACIASLLGQGGSSKYGLTCTWLRYFKNDRDRRDMITCGAAAGVAAAFRAPVGGVLFALEEAASWWRSALLWRTFFTTAVVAIFCATGKCGLFGEGGLIMYDVSSANITYSASDIFTVLVLGAIAGILGSLYNYLVDKVVQTYSIINEKGPAFKISLVVTIALLTSCCYYFLPWIAHCIPCPSDSTVSCPSINESGEYQNFQCPPGYYNDLASLFLNTNDDAIRNLFSPKIIKEFHVSSLFIYFSTIYFLGIITYGIAIPSGLFIPVILAGSAYGRLMSQLFEPIAKLDRGLFALLGAASFLGGTMRMTVSICVILLELTNDLLLLPLVMLVLLVSKSVADSFNKGVYDQILHIKGLPYLEAHAEPYMKNLVTRDVVSGPLITFSGIEKVGNILHALSSTRHNGFPVIDEPPFVDSPELCGLVLRSHLLVLLKEKVFLGDRDFADQSIFQKISTLDFGKPGSGKGIKLVDLDIQGEEMDMYVDLHPITNGSPYTVVETMSLAKAAILFRQHGLRHMCVVPKSQRRPPVVGILTRHDFMPEHVLGLYPDIKPQKRQ 787
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste9g01308 787 Gene3D - 593 771 IPR046342 -
Pste9g01308 787 SUPERFAMILY Clc chloride channel 89 595 IPR014743 -
Pste9g01308 787 PRINTS Chloride channel signature 209 228 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Pste9g01308 787 PRINTS Chloride channel signature 491 511 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Pste9g01308 787 PRINTS Chloride channel signature 178 195 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Pste9g01308 787 PRINTS Chloride channel signature 579 593 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Pste9g01308 787 PRINTS Chloride channel signature 523 539 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Pste9g01308 787 PRINTS Chloride channel signature 273 292 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Pste9g01308 787 PRINTS Chloride channel signature 541 560 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Pste9g01308 787 FunFam Chloride channel ClC3 101 411 - -
Pste9g01308 787 SUPERFAMILY CBS-domain pair 596 770 IPR046342 -
Pste9g01308 787 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 35 775 - -
Pste9g01308 787 Pfam CBS domain 724 769 IPR000644 -
Pste9g01308 787 PRINTS Plant CLC chloride channel signature 443 459 IPR002251 GO:0005247|GO:0006821|GO:0016020
Pste9g01308 787 PRINTS Plant CLC chloride channel signature 294 302 IPR002251 GO:0005247|GO:0006821|GO:0016020
Pste9g01308 787 PRINTS Plant CLC chloride channel signature 308 318 IPR002251 GO:0005247|GO:0006821|GO:0016020
Pste9g01308 787 Gene3D Clc chloride channel 101 592 - -
Pste9g01308 787 ProSiteProfiles CBS domain profile. 719 781 IPR000644 -
Pste9g01308 787 Pfam Voltage gated chloride channel 166 573 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Pste9g01308 787 CDD CBS_pair_voltage-gated_CLC_euk_bac 606 772 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste9g01308 Pste-Chr9 11584187 11593088 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste9g01308 18 785 Ion Channels AT5G49890 68.766 0.0 1049