Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste9g01298 ATATATACATTCTTTATCTCTCCCCAACGCCCTACTCCTCAAAAATTAGGGTTGGCAGCTACCGTTTTGCTTCGCTCAGCCTTTGAAATCAGAACAAGATCAAACATGGCAACGCAGATGAGCAAGAAGAGAAAGTTTGTGGCTGATGGAGTGTTCTTCGCCGAACTGAACGAGGTCCTAACGCGGGAGTTGGCGGAGGATGGTTACTCCGGTGTGGAGGTTAGGGTTACGCCGATGCGCACCGAGATCATCATCAGAGCCACCAGAACACAAGCCGTGCTCGGTGAGAAGGGAAGGAGAATTAGGGAACTGACTTCAGTGGTGCAGAAGAGGTTCAAGTTTCCCGAGAACAGTGTCGAGCTTTACGCTGAAAAGGTTAACAACAGAGGTCTCTGTGCCATTGCTCAGGCCGAGTCTCTTCGCTACAAGCTTCTCGGTGGACTCGCTGTTCGCAGGGCTTGTTATGGTGTTTTAAGATTTGTGATGGAAAGTGGTGCCAAGGGCTGTGAGGTTATTGTCAGTGGAAAATTGAGAGCTCAAAGAGCTAAATCCATGAAGTTCAAGGATGGTTACATGATATCATCCGGACAACCTGTCAAGGATTACATTGACTCTGCTGTGAGACATGTGCTCCTAAGACAGGGTGTTCTTGGTATCAAGGTTAAGATCATGCTTGATTGGGATCCTAAGGGTAAACAGGGTCCTAAAACTCCTCTTCCTGATCTTGTCACAATCCACACTCCAAAGGAGGAGGAAGAATACATCCGGCCTGCCCCGGTTGTGGCAGCTGATATTGAGGTCCCTGTTGCT 810 0.4852 IYTFFISPQRPTPQKLGLAATVLLRSAFEIRTRSNMATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQAVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKDYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPKTPLPDLVTIHTPKEEEEYIRPAPVVAADIEVPVA 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste9g01298 270 FunFam 40S ribosomal protein S3 128 263 - -
Pste9g01298 270 ProSiteProfiles Type-2 KH domain profile. 56 127 IPR004044 GO:0003723
Pste9g01298 270 NCBIfam 30S ribosomal protein S3 43 245 IPR005703 GO:0003735|GO:0006412|GO:0015935
Pste9g01298 270 SUPERFAMILY Ribosomal protein S3 C-terminal domain 128 226 IPR036419 -
Pste9g01298 270 CDD KH-II_40S_S3 40 130 - -
Pste9g01298 270 FunFam 40S ribosomal protein S3 36 127 - -
Pste9g01298 270 Gene3D - 128 254 IPR036419 -
Pste9g01298 270 Pfam Ribosomal protein S3, C-terminal domain 141 223 IPR001351 GO:0003735|GO:0006412
Pste9g01298 270 PANTHER 30S/40S RIBOSOMAL PROTEIN S3 41 233 - -
Pste9g01298 270 Pfam KH domain 55 128 IPR004044 GO:0003723
Pste9g01298 270 Gene3D - 33 126 IPR015946 -
Pste9g01298 270 SUPERFAMILY Prokaryotic type KH domain (KH-domain type II) 45 134 IPR009019 GO:0003723
Pste9g01298 270 ProSitePatterns Ribosomal protein S3 signature. 182 218 IPR018280 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste9g01298 Pste-Chr9 11484428 11486339 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste9g01298 36 270 Cytoplasmic Ribosomal Protein Gene Family AT5G35530 88.511 3.65e-153 425