LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste9g01281	ATAAAACACGTTATCCGAAAGCAAGCAATGTAGAAGTTCAGGAGATACCATCATCCCTCACACATCAGAGACCAACCAATGAGATCCTTGCATTGGATTGCAAATCTCTCACGTAGACCAATCAAAGTCCGTGTTGATGAATCTGACGTGGCACGTCCACATCCACGAGACCATGCATATAGTATCTGCATTTCAATCCTCTTACCCCTGCATCCTTCATCTACATTCAGCTGAGTTTGTGAGGCTTCCAAAGCATGGCTTCCATTTCAGCTTCCACTGCTGCCTCTTCCCTTGGCATGTCAGAAATGCTTGGAAACCCCATCAACATCAGTGGTGCTACAAGGCCAGCTCCATCTGCTTCTAGCCCTGTCTCCTTCAAGACTGTGGCTCTTTTCTCCAAAAAGAAGGCAGCACCTCCTCCAAAGAAAGCTGCTGCTGCTGTCTCTCCTGCCAATGATGAGCTTGCCAAGTGGTACGGACCTGACAGAAGGATATTCTTGCCAGAGGGTCTCTTGGACCGATCTGAGATCCCTGAGTACTTGACGGGAGAAGTCCCCGGAGAGTATTTTGGTAATGTGTGTTCATGCAGCTATGGTTATGACCCTTTTGGTCTTAGCAAGAAGCCAGAAGACTTTGCCAAATATCAGGCATTTGAGTTGATTCACGCCAGATGGGCAATGCTTGGTGCTGCTGGATTCATCATTCCTGAGGCCTTCAACAAATATGGAGCAAAGTGCGGTCCTGAGGCTGTTTGGTTCAAGACTGGAGCTCTTCTTCTTGATGGGGGTACGTTGAACTACTTCGGGAAACCCATCCCCATCAATCTTATTGTGGCTGTCATTGCTGAGATTGTTCTTGTGGGAGGTGCAGAGTACTACAGAATTATTAATGGCCTGAATTTCGAAGACAAACTTCATCCTGGTGGTCCATTTGACCCATTGGGCCTTGCAAATGATCCAGACCAAGCTGCACTGCTAAAGGTGAAGGAAATTAAGAATGGCAGACTTGCTATGTTTGCTATGCTTGGTTTCTACTTCCAAGCTTATGTCACTGGAGAAGGTCCTGTTGAAAACCTTGCAAAACATCTCAGTGACCCTTTTGGCAACAACTTGCTCACTGTCATTGCAGGGTCTGCTGAGAGAGCTCCAACTCTCTAAATTTCATCTTTATGTTTTTCTTCAATCTTAATGTACAATACATATCACTGAGATATTAATTTGTTCCTTGGAACTCAATTCTTGAATTTCTTCTAATTTTTCTGTGTCTAATTAAACAAAATCATACCATGAAACACTAAATGGAAATAAATTCCTAACTTCAAACTTAATAATTCTGGTGCTTGAGTTGAATAAG	1353	0.439	MASISASTAASSLGMSEMLGNPINISGATRPAPSASSPVSFKTVALFSKKKAAPPPKKAAAAVSPANDELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGEYFGNVCSCSYGYDPFGLSKKPEDFAKYQAFELIHARWAMLGAAGFIIPEAFNKYGAKCGPEAVWFKTGALLLDGGTLNYFGKPIPINLIVAVIAEIVLVGGAEYYRIINGLNFEDKLHPGGPFDPLGLANDPDQAALLKVKEIKNGRLAMFAMLGFYFQAYVTGEGPVENLAKHLSDPFGNNLLTVIAGSAERAPTL	300

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste9g01281	300	Gene3D	Chlorophyll a/b binding protein domain	80	300	-	-
	Pste9g01281	300	SUPERFAMILY	Chlorophyll a-b binding protein	72	291	-	-
	Pste9g01281	300	PANTHER	CHLOROPHYLL A/B BINDING PROTEIN	33	289	IPR001344	GO:0009765\|GO:0016020
	Pste9g01281	300	Pfam	Chlorophyll A-B binding protein	93	263	IPR022796	-
	Pste9g01281	300	FunFam	Chlorophyll a-b binding protein, chloroplastic	80	300	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste9g01281	Pste-Chr9	11324648	11327263	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pste9g01281	11	300	Chloroplast and Mitochondria Gene Families	AT4G10340	78.351	2.16e-149	418

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Pste9g01281	9	11324648	11327263	Pste9g01281	9	11324648	11327263	ECH
	Pste9g01281	9	11324648	11327263	Pste4g00472	4	3571676	3574112	PCT