LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste9g01247	ATGAACTTGAAACAATACTGTTGTTTCCTCTTGGAGGGGCAAAGCAAAATACAGATTGCCAACAAGAAGAACAACAGGGACTATCCATGGGAAATGTACACCTTGAAGGAGTTGCTTCGAGCAACAAACAACTTTCATCAAGATAATAAGATTGGAGAGGGTGGATTTGGAAGTGTTTATTTTGGTCGAACAATGAAGAGGTTGAAGACAATGACTGCAAAGGCAGAGATGGAGTTTGCAGTGGAAGTGGAAGTATTAGGAAGAGTGAGGCATAAGAATTTGTTGGGGTTGAGGGGATTCTATGCAGGAGGAGATGAAAGGTTGATTGTGTATGATTACATGCCTAACCATAGCCTACTCACCCATTTGCATGGTCCACTTGCTAAGGAATGTCAACTGGATTGGTCTAGAAGAATGAGCATAGCAATTGGAGCAGCTGAAGGTCTAGCGTATTTACACCATGAGTCAACTCCTCACATCATACACAGAGATATAAAAGCGAGCAATGTTCTTCTAGACCATGAATTTCAAGCCAAGGTTGCAGATTTTGGTTTTGCAAAGTTGGTACCAGATGGGGTGACCCATCTTACCACAAAGGTTAAAGGCACTTTGGGATATTTGGCACCAGAATACGCCATGTGGGGAAAGGTTTCTGAAAGCTGTGATGTTTACAGTTTCGGAATTTTACTTTTAGAGATTATTAGTGCAAAGAAACCAATTGAAAAATTTCCAGGAGGAGTGAAAAGGGATATTGTTCAATGGATCACACCATATATCAACAAAGGTCTCTTCAACAATATAGCGGATCCAAAGTTGAAGGGGAAATTTGATTTGGAGCAGTTGAAAAATGTGATCATCATAGCTCTTAGATGCACTGATAGTAGCCCTGATAAGAGGCCTAGCATGAAAGAGGTGGTGGATTGGCTCAAGAATGGTGTAGAAAGCACTTAA	951	0.409	MNLKQYCCFLLEGQSKIQIANKKNNRDYPWEMYTLKELLRATNNFHQDNKIGEGGFGSVYFGRTMKRLKTMTAKAEMEFAVEVEVLGRVRHKNLLGLRGFYAGGDERLIVYDYMPNHSLLTHLHGPLAKECQLDWSRRMSIAIGAAEGLAYLHHESTPHIIHRDIKASNVLLDHEFQAKVADFGFAKLVPDGVTHLTTKVKGTLGYLAPEYAMWGKVSESCDVYSFGILLLEIISAKKPIEKFPGGVKRDIVQWITPYINKGLFNNIADPKLKGKFDLEQLKNVIIIALRCTDSSPDKRPSMKEVVDWLKNGVEST	316

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste9g01247	316	Gene3D	Phosphorylase Kinase; domain 1	10	113	-	-
	Pste9g01247	316	CDD	STKc_IRAK	51	311	-	-
	Pste9g01247	316	FunFam	PTI1-like tyrosine-protein kinase At3g15890	114	316	-	-
	Pste9g01247	316	SUPERFAMILY	Protein kinase-like (PK-like)	26	312	IPR011009	-
	Pste9g01247	316	SMART	serkin_6	45	309	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pste9g01247	316	Pfam	Protein kinase domain	45	307	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pste9g01247	316	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	160	172	IPR008271	GO:0004672\|GO:0006468
	Pste9g01247	316	PIRSF	ILK	14	315	-	-
	Pste9g01247	316	ProSiteProfiles	Protein kinase domain profile.	45	309	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pste9g01247	316	Gene3D	Transferase(Phosphotransferase) domain 1	114	314	-	-
	Pste9g01247	316	FunFam	PTI1-like tyrosine-protein kinase At3g15890	17	113	-	-
	Pste9g01247	316	PANTHER	PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA	17	311	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste9g01247	Pste-Chr9	10808352	10810083	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pste9g01247	32	305	Trihelix Transcription Factor Family	AT1G68690	44.211	1.05e-78	250

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-XV	Pste9g01247		Pkinase	1.1e-40	CL0016