Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste9g01246 GTGAGTTGGATTCTAATCTTACAAGCGAAGGATTTCAGAATCAAGCATGTCATATCAGGCAAATGGAAAGTAGTTTCAAACCCTAACAACCAAAATATACTTCGATTTTCTCGCTTTGGTATCTTTGCATTCCTCAAAAATAGCATACACAATGATGAATCCTCTCCACCCAATGATCTTTGTACAATTCAAATGAAAGGGCAAGGAGAAAGACTTGCAATGGATGAAAACAAAAAGTGGATGCACAAGGAAACTGAAAGACAAAGAAGGCAAGAAATGGGAAAACTCTGCAACACCCTTAGATCACTTCTGCCTTTAGAATACATTAAGGGAAAGCGGTCAACTTCTGATCATGTGTATGAGGCTATGAATTATATCAACCACCTTCAAGATAATGTGAAGCAATTGCAAGCAAAGAAGGATGAGTTGGCGAAAGTGACTAATTTGAGTAACATCTGTCCTGAGAATGAAAGTTCTAGCACCACCCACTTTCCACCCTTGGTTTTTGTTCATCCTTTCCAGGGAGGCCTTGAGATTATTTGCAGTTACAGCTTCTGTAAAAGTGCGTTTCCTTTGTCAAGAGTGTTGGACATTCTGCTTAAAGAAGGGCTTAATGTAGTTAGCGCTACTTCAATCAGAAGAGATGGCAGATTCATACACACTATACGATCCGAGGTACCATGTCAATTTAATTGTCATTAAACATGCATTAGTGG 716 0.3897 VSWILILQAKDFRIKHVISGKWKVVSNPNNQNILRFSRFGIFAFLKNSIHNDESSPPNDLCTIQMKGQGERLAMDENKKWMHKETERQRRQEMGKLCNTLRSLLPLEYIKGKRSTSDHVYEAMNYINHLQDNVKQLQAKKDELAKVTNLSNICPENESSSTTHFPPLVFVHPFQGGLEIICSYSFCKSAFPLSRVLDILLKEGLNVVSATSIRRDGRFIHTIRSEVPCQFNCH 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste9g01246 233 Gene3D - 68 155 IPR036638 GO:0046983
Pste9g01246 233 Pfam Helix-loop-helix DNA-binding domain 79 130 IPR011598 GO:0046983
Pste9g01246 233 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 76 147 IPR036638 GO:0046983
Pste9g01246 233 CDD bHLH_AtORG2_like 78 151 - -
Pste9g01246 233 Coils Coil 126 146 - -
Pste9g01246 233 SMART finulus 83 135 IPR011598 GO:0046983
Pste9g01246 233 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 77 129 IPR011598 GO:0046983
Pste9g01246 233 FunFam Transcription factor bHLH126 70 157 - -
Pste9g01246 233 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 64 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste9g01246 Pste-Chr9 10787915 10788933 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste9g01246 82 232 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G25410 43.590 3.52e-33 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pste9g01246 HLH 1.9e-09 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste9g01246 9 10787915 10788933 Pste9g01246 9 10787915 10788933 ECH
Pste9g01246 9 10787915 10788933 Pste4g01727 4 12917618 12919458 PCT