Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste9g01231 CACGGCTTACGTGTAGTTCCCAAAAACTCTTTATCGATTCATCAAAACACAATGATAACATTCATCTCTCTGTGTCACGAACCCTAATCTCATCAATTAGGGTTTTCATCTATTTCCTAAGAGCAGAACTTCACTTGACTTCACTAAAATTACCCTTGATGATCACGCTATACAGGCTCCTGCCCATCCTTCTCAAGCTTTCCGAGTCACAACCCTCGATCCTCCATTCCTCTTCCAATCTCACCCAAAGATAAAGCATAAATACTCTTTCGAATTCGAATTCCGATTCCCTCCACATATTCCCCAGTTCCGATTCACTCGATCACTCTCTCTCGCGTACCATCATGGACGTGGACGGTGGAAGCAAGCGCGTGTACAATCGCCTCGGTGGGGACTCGAAGAACCCGAAAGTGTGCTTCCACTGGCAACAGGGCAAGTGCTACCGCTACCCGTGCCCCTTTCTGCACAGCGAATTGCCCGTCTCCAATGGAGGGCCCTCCAAGCGGGCCCACGACAATTCGGGCTTCAACGGCCCGCGCCGTGGCCCTAATTTCAACAATACGTGGGGCCGCGGTGGGGGCCGCGGTGCCGGTGCCGGTGCCGGGAGAGGGGTGGTGGTGAAGGCGGATAAAGTTTGTAATTATTGGATTCAGGGGAGTTGTAGCTTTGGAGAGAGGTGCAAGTTCCTCCACTCTTGGAGTGTCGGTGATGGGTTTTCTATGCTCACCCAGCTCGAAGGGCATACGAAGGCTGTGAGTGCGATTGCCTTTCCTGCTGGTTCTGATAAGCTGTATACCGGAAGCACTGACGAGACTGCAAGAATTTGGGATTGCGAGTCTGGAAAGTGTGTTGGTGTGATCAATCTTGGTGGTGAAGTGGGTTGCATGATCAGTGAAGGTCCCTGGGTTTTTGTTGGGATACCCAATTTTGTGAAGGCCTGGAACACTCAAAATTTAGTGGAGCTAAGTCTAAATGGACCTGTTGGACAAGTGTATGCTCTTGTTGTGAATAATGATATGCTATTTGCTGGTACACAGGATGGATCTATATTGGCATGGAAGTTTAACACTGGTACCAACAACTTTGAGCCAGCTGCATCACTTAAAGGTCATTCTCGTGGTGTTGTTTCATTATTCGTTGGTGCTAATAGACTTTATTCTGGGTCAATGGACAATACAATAAGAGTATGGAACCTTGAAACCTTGCAGTGCATACAGACACTAACAGGGCACACATCTGTTGTGATGTCTGTTCTATGTTGGGACCAATTCCTTTTATCTTGTTCCTTGGACAAAACAGTGAAGGTATGGTATGCTACAGAAAGTGGAAACTTGGATGTGACATATACTCATAATGAAGAAAATGGTGTAGTTACCCTATGTGGGATGCATGATTCACAAGGCAAGCCCATTTTGCTGTGCTCTTGCAATGATAATACTGTGCGCCTCTATGATCTGCCATCATTTGCAGAGAGGGGTAAGATACTGACAAAACAAGAGGTACGAGCAATTCAGGTAGGACCTAACGGCATATTCTTCACCGGTGACGGTACTGGTGAAATAAGAGTGTGGAATTGGATTGCGGAGGCACCTACTACCATAAAATAAAGTGACACAATGTGTCCCATTTAATTGTTTTACTAGTTTTTGTTTTCTTCTGGTCTTCCTTTTTGTAATATTTTAGCTGCAAGAAGGGAATTAAGGCTGAGGTTGGGATTGGAAAGAGAGCTAAAGGGAGTGTGTGTAATTTAAGTTTGCGGAAGTAGTCTTGCTTTTAGAATCTGAGCTCTGTTGGTTGTTTTAGTGTTAAGTGGGTATCCTTGGCGCAAAGCTGTGCTCAAGTAGGCGATGCTTGTAACATTCTGTGAAATCACAACATTGTCTAGCATTATTACTTAACACCTTCCAATACCTATATATATACACGCCAAATAAATGTTTGTTATTTGTTACTTACAAGTAACTGGATCTGGGAGGTCTTGTATTTTCGTCCGTTCGCCTGCTAAGTGGAATGTCATAATGACTGGCATCATTG 2034 0.4518 MDVDGGSKRVYNRLGGDSKNPKVCFHWQQGKCYRYPCPFLHSELPVSNGGPSKRAHDNSGFNGPRRGPNFNNTWGRGGGRGAGAGAGRGVVVKADKVCNYWIQGSCSFGERCKFLHSWSVGDGFSMLTQLEGHTKAVSAIAFPAGSDKLYTGSTDETARIWDCESGKCVGVINLGGEVGCMISEGPWVFVGIPNFVKAWNTQNLVELSLNGPVGQVYALVVNNDMLFAGTQDGSILAWKFNTGTNNFEPAASLKGHSRGVVSLFVGANRLYSGSMDNTIRVWNLETLQCIQTLTGHTSVVMSVLCWDQFLLSCSLDKTVKVWYATESGNLDVTYTHNEENGVVTLCGMHDSQGKPILLCSCNDNTVRLYDLPSFAERGKILTKQEVRAIQVGPNGIFFTGDGTGEIRVWNWIAEAPTTIK 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste9g01231 420 CDD WD40 126 410 - -
Pste9g01231 420 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 253 286 - -
Pste9g01231 420 SMART WD40_4 327 370 IPR001680 GO:0005515
Pste9g01231 420 SMART WD40_4 373 410 IPR001680 GO:0005515
Pste9g01231 420 SMART WD40_4 246 283 IPR001680 GO:0005515
Pste9g01231 420 SMART WD40_4 286 323 IPR001680 GO:0005515
Pste9g01231 420 SMART WD40_4 202 239 IPR001680 GO:0005515
Pste9g01231 420 SMART WD40_4 123 162 IPR001680 GO:0005515
Pste9g01231 420 ProSiteProfiles Trp-Asp (WD) repeats profile. 130 171 IPR001680 GO:0005515
Pste9g01231 420 Pfam WD domain, G-beta repeat 127 162 IPR001680 GO:0005515
Pste9g01231 420 Pfam WD domain, G-beta repeat 249 283 IPR001680 GO:0005515
Pste9g01231 420 Pfam WD domain, G-beta repeat 288 322 IPR001680 GO:0005515
Pste9g01231 420 Gene3D - 193 418 IPR015943 GO:0005515
Pste9g01231 420 ProSiteProfiles Trp-Asp (WD) repeats profile. 253 292 IPR001680 GO:0005515
Pste9g01231 420 PRINTS G protein beta WD-40 repeat signature 149 163 IPR020472 -
Pste9g01231 420 PRINTS G protein beta WD-40 repeat signature 270 284 IPR020472 -
Pste9g01231 420 PRINTS G protein beta WD-40 repeat signature 310 324 IPR020472 -
Pste9g01231 420 Gene3D - 90 123 - -
Pste9g01231 420 FunFam Zinc finger CCCH domain-containing protein 48 118 208 - -
Pste9g01231 420 ProSitePatterns Trp-Asp (WD) repeats signature. 270 284 IPR019775 -
Pste9g01231 420 MobiDBLite consensus disorder prediction 48 75 - -
Pste9g01231 420 FunFam Zinc finger CCCH domain-containing protein 48 210 418 - -
Pste9g01231 420 SUPERFAMILY WD40 repeat-like 124 412 IPR036322 GO:0005515
Pste9g01231 420 ProSiteProfiles Zinc finger C3H1-type profile. 93 119 IPR000571 GO:0046872
Pste9g01231 420 Gene3D - 124 183 IPR015943 GO:0005515
Pste9g01231 420 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 130 167 - -
Pste9g01231 420 SUPERFAMILY CCCH zinc finger 94 117 IPR036855 GO:0046872
Pste9g01231 420 ProSiteProfiles Zinc finger C3H1-type profile. 18 44 IPR000571 GO:0046872
Pste9g01231 420 PANTHER - 94 414 IPR044715 -
Pste9g01231 420 SMART c3hfinal6 20 43 IPR000571 GO:0046872
Pste9g01231 420 SMART c3hfinal6 94 118 IPR000571 GO:0046872
Pste9g01231 420 Pfam Zinc finger domain 98 116 - -
Pste9g01231 420 ProSitePatterns Trp-Asp (WD) repeats signature. 149 163 IPR019775 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste9g01231 Pste-Chr9 10428254 10435124 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste9g01231 225 410 Miscellaneous Gene Families AT5G08390 26.768 1.59e-08 55.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pste9g01231 WD40 0.00019 CL0186
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste9g01231 9 10428254 10435124 Pste9g01231 9 10428254 10435124 ECH