Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste9g01230 TGAAAAGATTGATGGATGAAAGAAAGAAAGTGGTGAAAGTCGTTTTGAAGAACAGCAAGAACCCAAAACTGGCATGGCATCTGGTGAAGCGAGTGTTATCGTGCTCTTCATTCTCCAAGCCTACTCACATTGAACACTTAGTTACCATAACAAGCCGCATCCTCGCCGGAGCTAAGATGCATGAGGAACTCCATCAGCTCCACAAGCTCCTCCTATCTTCTCACCCTCACCACATTGCCCATCCTTCCATCATTAGCATCGTTCGAGTCCTCGCTCAATTGGGCCACATCGACGAGGCTTTCTCCCACTTCAACTCCCTCAGAGCCCAATTCCCCTCACTCCCTCTCTCTCTTCCCTTCTACAACCTCCTCCTCCGTTCTACCCTCCAACACTCCCGCCCCGATCTCGTCACCTCCCTCTACACCCACATGATCGCCTCTCGTGTCACCCCTCAGACCTACACCTTCAACCTCCTTATTCACTCCCTTTGCCACTCTCGCGCTTTTGACCACGCCCTCCAACTGTTCGACAAAATGTCTCTAAAAGGATGCCCCCCCAACGAGTTCACTCTCGCTCTTCTCGTTCGCGGGTTGTGCCGCGCTGGCCACCTCCAACAAGCCTTGGACCTCGTTAACAATAATCACAATTCCACTCCTATTGCTAACAGGGTTGTCTACAATACTCTTGTTTCTAGGTTGTGCAGAGACGAGCGTAATGATGAAGCTCAGCAGCTTGTTCAGAGGATGAGCCAGCAGGGTCTGTTTCCTGATGTTGTTACGTTTAATTCTAGGATTTCGGCGCTTTGTAGATCTGGGAAGGTTCTAGAGGCGTCCAGGATTTTCAGAGATATGCAGATGGATGCGGAGTTGGGACTTCCTAGGCCCAACGTTGTAACTTTTAATTTGATGCTTAAGGGGTTCTGCAAGCAAGGGATGATGGAGGATGCAAGAGGTTTGGTTGATACCATGAAGAAAGCTGGGGTTTTTGACACTTTGAGAAGTTATAATATATGGTTGTTTGGTTTGGTTAGGAATCGGGAGTTGTTGGAGGCCCGTTTCGTTCTTGATGAAATGGTGACGAAAGGCTTTGAACCCAATGCGTACACTTATAACATCATGGTGGATGGGCTATGCAGGAACCATATGCTGTCGGATGCAAGGGAGTTGATGGATGTCATGATAAGCAATGGGGTTTACCCTGACACAGTTACTTATAGTTCCCTGCTGCATGGATACTGCAGCAAAGGGAGGGTTTTTGAAGCTAAAAGACTTCTTCATGAAATGAGAAGGAAAGGTTGTCAGCCTAATACTTATACTTGCAACACATTGCTTCATAGCTTATGGAAAGAGGGGAGAACACAAGAGGCAGAGGAAATGCTGCAAAAGATGAATGAAAAAAGTTATCAACCGGATACTGTGACCTGTAATATAGTGGTCAATGGTCTATGTAGAAATGGAGAATTGGACAAAGCAAGTGAAATTGTAAGTGAGATGTGGACTAATGGAACAACATCCCTTCATAAAGGAAACTCGTTTGCCAGTCTAATTAATTCAATTGGTAATGCATCAAACTGCTTGCCTGATGGAATTACATACACAACTTTGATTAATGGACTTTGCAGAGTTGGAAGGCTAGAGGAAGCCAAAAAGTGGTTTATTGAGATGTTGGCAAAAAACCTGTGTCCTGATTCTGTTACCTATGATACATTCATTTGGAGTTTCTGTAAACAAGGAAAGATATCATCTGCCTTCCGTGTCTTGAAGGATATGGAGAGAAATGGCTGCAGCAAGACTCTAAAAACTTATAATGCATTGATCATGGGTTTAGGAAGTAAAAAACAAATATTTGAAATATATGGATTGATGGATGAGATGAGAGAAAAAGGAATAAGTCCAAATATTTGCACTTATAATAACACAATCAATTGCCTCTGTGAAGGAGGAAAAGAAAAGGAAGCCATTTCTCTGTTACAAGAAATGTTGGATAAGGGCATAACTCCCAATATATCTTCCTTCAAAATATTGATTAAGGCCTTCTGCAAATCAAGTGATTTTAAAGGAGCTTCAGAACTATTTGAGGTAGCTTTGAGTATATGTGGCCACAAAGAAGCCTTGTACAGTTTGATGTTCAATGAATTACTTGCTGGAGGACAACTTTTTGAAGCAAAGCAACTATTCGAAGCTTCCTTAGATAGATATCTCGCATTGAAGAATTTTATGTATAAAGATTTGATTGGAAGACTTTGCCAGGATGATAGATTAGCAGATGCTAATAGCCTTCTTCATAAATTGATTGATAAGGGATATGGCTTCGATCATGCATCATTCATGCCAGTGATTGATGGCTTAAGTAAAATAGGAAACAAACAACAAGCAGATGAACTAGCAAAGAGAATGATGGAATTGGAATTTGAAGATAGACCTGTCGACAGGACTTATCAAAACGTAAAGAGAGTCGTTCCTGGTAAACTACAGAAGGATGGAGGACGTGATTGGCAGGACATAGTTAACAGGGATGGTGGTGGTGGAGTTGCACTGAAAACTCTTAAGCGTGTACAAAAAGGCTGGGGTCAAGGAATTTCAACCTCAAAGGTGGGAGAGAAGAGAATAGCAGATCAGAGAATTAAAAGGATATGCAACACAGAAAGTAATTCAAAAAAGTTTATTAGTTATATAGAAATTGATGCATACTTTTTCCCTCTTGTACATGAGTGTATATTTGGAATATATATTGACTTTCTGGCAAGGCAGTTGAACATCACGGTAGCAAACCTCTATGGTCTCCTTTTCTTTTTAGCATCTGGGAGGCTTGGGAATCTCCACAGCTTTAAAATGACTGCTGGTTGTATTACTTTCAAAGATTGGGACTACTCTGTTCTTATACAAGACAATTGGAAAGGGTTGATGTGGCTGAAATGCGTTTTTGCTGATCGGTACATTCTTGGTGAGCAATTGGGTTGGGAGCAGTTTGGTGTCATAAAGGCATGTTCTGACAAGTTGACAGGAGACGTTTTAGCCTGCAAATCAATTTCTAAAGATAGGTTGGTTACTTTGGATGATTTGAGGAGTGTCAAACTTGAGATAGAGATAATGGCTAGGCTATCTGGGCACCCCAATGTTGTGGATCTCAAAGCGGTTTATGAAGGGGAAGGTTTTGTTCACTTGGTGATGGAGCTTTGTGCTGGAGGGGAGTTGTTTCACAGGGTTCTCTTTAGGCACCTTATGCAGGTAGTTTTGTATTGTCACGAAAACGGGGTTGTTCATAGAGATTTTAAGCCTGAGAACATTCTCTTAGCAACAAGGTCCTCATCTCCTGTTAAATTGGCAGTGGGCTTGCAACTTACATCAAGCCTGAGTTTGTATGGCTTAGTTGGGAGTCCATTCTATATAGCTCCAGAGGTACTGGCGGGTGCATATAACCAGGCTGCTGATGTGTGCAGTGCAGGTGTTATTCTTTACATTCTGTTGAGTGGGACACCTCCGTTTTGGGGGAGGACCAAATCACGGATTTTTGAAGCTGTTAAAGCTGCTTCCCTCAAGTTTCCATTGGAACCTTGGGATCGCATTTCTGAATCAGCTAAGGATTTGATTAGGAAATGCTCTGCACAGACCCTTCTCAAAGGCTCACTGCCCAAGAGGTATTGGATGTCAGCACTGTCTTCACCAGCAGTGGGGGAGCCTTGTAGAGACTACCAGCAGAAAACAAGAACTTGGCCT 3716 0.4284 MDERKKVVKVVLKNSKNPKLAWHLVKRVLSCSSFSKPTHIEHLVTITSRILAGAKMHEELHQLHKLLLSSHPHHIAHPSIISIVRVLAQLGHIDEAFSHFNSLRAQFPSLPLSLPFYNLLLRSTLQHSRPDLVTSLYTHMIASRVTPQTYTFNLLIHSLCHSRAFDHALQLFDKMSLKGCPPNEFTLALLVRGLCRAGHLQQALDLVNNNHNSTPIANRVVYNTLVSRLCRDERNDEAQQLVQRMSQQGLFPDVVTFNSRISALCRSGKVLEASRIFRDMQMDAELGLPRPNVVTFNLMLKGFCKQGMMEDARGLVDTMKKAGVFDTLRSYNIWLFGLVRNRELLEARFVLDEMVTKGFEPNAYTYNIMVDGLCRNHMLSDARELMDVMISNGVYPDTVTYSSLLHGYCSKGRVFEAKRLLHEMRRKGCQPNTYTCNTLLHSLWKEGRTQEAEEMLQKMNEKSYQPDTVTCNIVVNGLCRNGELDKASEIVSEMWTNGTTSLHKGNSFASLINSIGNASNCLPDGITYTTLINGLCRVGRLEEAKKWFIEMLAKNLCPDSVTYDTFIWSFCKQGKISSAFRVLKDMERNGCSKTLKTYNALIMGLGSKKQIFEIYGLMDEMREKGISPNICTYNNTINCLCEGGKEKEAISLLQEMLDKGITPNISSFKILIKAFCKSSDFKGASELFEVALSICGHKEALYSLMFNELLAGGQLFEAKQLFEASLDRYLALKNFMYKDLIGRLCQDDRLADANSLLHKLIDKGYGFDHASFMPVIDGLSKIGNKQQADELAKRMMELEFEDRPVDRTYQNVKRVVPGKLQKDGGRDWQDIVNRDGGGGVALKTLKRVQKGWGQGISTSKVGEKRIADQRIKRICNTESNSKKFISYIEIDAYFFPLVHECIFGIYIDFLARQLNITVANLYGLLFFLASGRLGNLHSFKMTAGCITFKDWDYSVLIQDNWKGLMWLKCVFADRYILGEQLGWEQFGVIKACSDKLTGDVLACKSISKDRLVTLDDLRSVKLEIEIMARLSGHPNVVDLKAVYEGEGFVHLVMELCAGGELFHRVLFRHLMQVVLYCHENGVVHRDFKPENILLATRSSSPVKLAVGLQLTSSLSLYGLVGSPFYIAPEVLAGAYNQAADVCSAGVILYILLSGTPPFWGRTKSRIFEAVKAASLKFPLEPWDRISESAKDLIRKCSAQTLLKGSLPKRYWMSALSSPAVGEPCRDYQQKTRTWP 1235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste9g01230 1235 SUPERFAMILY Protein kinase-like (PK-like) 971 1198 IPR011009 -
Pste9g01230 1235 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 594 628 IPR002885 -
Pste9g01230 1235 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 397 431 IPR002885 -
Pste9g01230 1235 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 327 361 IPR002885 -
Pste9g01230 1235 Gene3D Tetratricopeptide repeat domain 47 211 IPR011990 GO:0005515
Pste9g01230 1235 Gene3D Tetratricopeptide repeat domain 503 611 IPR011990 GO:0005515
Pste9g01230 1235 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN PET309, MITOCHONDRIAL 16 456 - -
Pste9g01230 1235 Gene3D Tetratricopeptide repeat domain 427 497 IPR011990 GO:0005515
Pste9g01230 1235 Gene3D Tetratricopeptide repeat domain 212 283 IPR011990 GO:0005515
Pste9g01230 1235 Gene3D Tetratricopeptide repeat domain 357 426 IPR011990 GO:0005515
Pste9g01230 1235 Gene3D Tetratricopeptide repeat domain 284 356 IPR011990 GO:0005515
Pste9g01230 1235 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 629 663 IPR002885 -
Pste9g01230 1235 Pfam Protein kinase domain 977 1198 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pste9g01230 1235 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 253 283 IPR002885 -
Pste9g01230 1235 Pfam PPR repeat 291 320 IPR002885 -
Pste9g01230 1235 Pfam PPR repeat 463 494 IPR002885 -
Pste9g01230 1235 Pfam PPR repeat 520 551 IPR002885 -
Pste9g01230 1235 Gene3D Tetratricopeptide repeat domain 612 695 IPR011990 GO:0005515
Pste9g01230 1235 Pfam PPR repeat family 330 375 IPR002885 -
Pste9g01230 1235 Pfam PPR repeat family 628 677 IPR002885 -
Pste9g01230 1235 Pfam PPR repeat family 147 196 IPR002885 -
Pste9g01230 1235 Pfam PPR repeat family 218 266 IPR002885 -
Pste9g01230 1235 Pfam PPR repeat family 396 443 IPR002885 -
Pste9g01230 1235 Pfam PPR repeat family 558 605 IPR002885 -
Pste9g01230 1235 ProSiteProfiles Protein kinase domain profile. 975 1220 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pste9g01230 1235 SUPERFAMILY HCP-like 407 726 - -
Pste9g01230 1235 Gene3D Phosphorylase Kinase; domain 1 976 1061 - -
Pste9g01230 1235 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 362 396 IPR002885 -
Pste9g01230 1235 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 148 182 IPR002885 -
Pste9g01230 1235 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1082 1094 IPR008271 GO:0004672|GO:0006468
Pste9g01230 1235 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 559 593 IPR002885 -
Pste9g01230 1235 NCBIfam pentatricopeptide repeat 364 398 IPR002885 -
Pste9g01230 1235 NCBIfam pentatricopeptide repeat 255 281 IPR002885 -
Pste9g01230 1235 NCBIfam pentatricopeptide repeat 526 560 IPR002885 -
Pste9g01230 1235 NCBIfam pentatricopeptide repeat 561 592 IPR002885 -
Pste9g01230 1235 NCBIfam pentatricopeptide repeat 399 433 IPR002885 -
Pste9g01230 1235 NCBIfam pentatricopeptide repeat 294 324 IPR002885 -
Pste9g01230 1235 NCBIfam pentatricopeptide repeat 631 665 IPR002885 -
Pste9g01230 1235 NCBIfam pentatricopeptide repeat 150 184 IPR002885 -
Pste9g01230 1235 NCBIfam pentatricopeptide repeat 469 498 IPR002885 -
Pste9g01230 1235 NCBIfam pentatricopeptide repeat 220 254 IPR002885 -
Pste9g01230 1235 NCBIfam pentatricopeptide repeat 597 630 IPR002885 -
Pste9g01230 1235 NCBIfam pentatricopeptide repeat 434 468 IPR002885 -
Pste9g01230 1235 NCBIfam pentatricopeptide repeat 330 363 IPR002885 -
Pste9g01230 1235 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 524 558 IPR002885 -
Pste9g01230 1235 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 292 326 IPR002885 -
Pste9g01230 1235 Gene3D Tetratricopeptide repeat domain 696 884 IPR011990 GO:0005515
Pste9g01230 1235 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 432 466 IPR002885 -
Pste9g01230 1235 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 218 252 IPR002885 -
Pste9g01230 1235 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 467 501 IPR002885 -
Pste9g01230 1235 Gene3D Transferase(Phosphotransferase) domain 1 1062 1213 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste9g01230 Pste-Chr9 10408560 10414794 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste9g01230 548 797 Glycosyltransferase AT1G05670 24.400 5.99e-18 87.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Pste9g01230 Pkinase 5.1e-39 CL0016