LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste9g01228	ATGGCTGTTGCCAATAGCAACAGCAGCAATGAACCTTGTACTACTTCATACAATTGTTACAAAGTGGCAGGCTTGACTGAGACCATATTGGACACAAGTCACATCTCTAATTTGAAAGATCGGTACATTCTCGGCGAGCAATTGGGTTGGGGGCAGTTTGGTGTCATAAAGGCATGTTCTGACAAGTTGACTGGAGAGGTTTTAGCCTGTAAATCAATTGCTAAAGATAGGTTGGTTACTTCGGATGATTTGAGGAGTGTCAAACTTGAGATAGAGATAATGGCTAGGCTATCTGGGCACCCCAATGTTGTGGATCTCAAAGCGGTTTATGAAGAGGAAGGTTTTGTTCACTTGGTGATGGAGCTTTGTGCCGGAGGGGAGTTGTTTCACAGGTTAGAGAAGCATGGATGGTTTTCAGAATCTGAAGCTAGGGTTCTCTTTAGGCACCTTATGCAGGTGGTTTTGTATTGTCACGAAAATGGGGTTGTTCATAGAGATTTGAAGCCTGAGAACATTCTCTTAGCAACAAGGTCCTCCTCATCTCCTATTAAATTGGCAGATTTTGGGCTTGCAACTTACATCAAGCCTGGTCAGAGTTTGCATGGCTTAGTTGGGAGTCCATTCTATATAGCTCCAGAGGTACTGGCGGGTGCGTATAACCAGGCTGCTGATGTGTGGAGTGCAGGTGTTATTCTTTACATTCTGTTGAGTGGGACACCTCCGTTTTGGGGGAAGACCAAATCACGGATTTTTGAAGCTGTTAAAGCTGCTTCCCTCAAGTTTCCATTGGAACCTTGGGATCGCATTTCTGAATCAGCTAAGGATTTGATTAGGGGAATGCTCTGCACAGACCCTTCTCGAAGGCTCACTGCTCAAGAGGTATTGGATCATTGTTGGATGAAAAGCAACCAAACAAATACTGATCAACTTGGTGAACATAAAACTGGAAGTTGTGAAGAATGGGATGTTGGTGGCAGCTCATTCTCTGCCTCTTTCATGTCCAGGAATCAGGACATTAGCTTCGGCACCGACTCACCTACTTGTGTTGCTCAATCGCCCACATTCACATGCAGATCATCATTTTCTTCTTTTTTGGTGGAACCTATCACTCCATATCTAGTTTCTGGTGGGTTTTCATTCCAGAGTGCAGACGATTCCCCTGGTTTGGAGTTTTCCTCCCCCATTCCCTCAATGCTTAGCTTTTCATTTCTCAGCCCCTCTTCCGTTGTTGAGCAAAAGAGTTGTAAATTAGAGTGCACAGCTAACATGTCAGACGTGAATGCAATTGCTGGAGAAACAAACTTGGAGAAGTTGTTTTTGCTTCAAGATTCTCCCCTTTGCATTGGAGATAATGTTAAAGAAACGAATCGCAAACCATTAGAAGCTAAAAGGGCAAGTGGAATGAATGGACATAAGGTGTTAGGAATCCACAGCAAGAGAAACAGAACAATTGGACTTGGTGAGTGTGAGCAACTTGACCTTATGGTGACTGAATCAGTCATCCGTTGGTCATCATGCACTCAACTACCTACATCTTTGAGATCTTCTCTTGTCTGCTAAGCAGATAGAGGATTCAACTCATTAATCGGTTTGCTTTATGCTGTGCTTAAATTGCAGCATACTTGTGCAAATTTTGCTTGGCTAACGCGTTGTATATGTTTTTGTTTTTCTTATTTGCATTGTTGTTAACTGTCTTCTGGCTGGTGCAAGGTTTTGTTTAGTTCTGGTAGTCGCTTCTTGGTGTGTCTGATTGAGAAGTGGTACTATTACTAATTCCTCACTTTCTTGTTTTTTTTCCTCCTTTCCTCCTCTCATGTTATGTGCCTTGTGTATGAGTAAAAGCCAAAAGGCATTCTTTCAGCCTGGTTTGTAAATTAAATGAACTTCATCTTGATGTGCTCTAGTTATCTTAACCTGATTATGTATTGCAGTTATCTCGATTTATCAGCATTAGTGTGTTTATTGTTTAATTTATTACAAAGAAATACTTGTTTTTTAGTTAATTTTTTTAGAGAACATTTTGGGGTTCGAAATGATCGAAATCAAACTATTGTGCTTGTCTCCTTTCTGCATCAAGTTTAATTTTGCATCAAGTTTAACTTATATTGATAATATAAGTTTTTAAATTGTTATTTAGTTTAAATATAATGTATGGTAAGATTAATAATATTTTAAAATTCATATTTAG	2188	0.4008	MAVANSNSSNEPCTTSYNCYKVAGLTETILDTSHISNLKDRYILGEQLGWGQFGVIKACSDKLTGEVLACKSIAKDRLVTSDDLRSVKLEIEIMARLSGHPNVVDLKAVYEEEGFVHLVMELCAGGELFHRLEKHGWFSESEARVLFRHLMQVVLYCHENGVVHRDLKPENILLATRSSSSPIKLADFGLATYIKPGQSLHGLVGSPFYIAPEVLAGAYNQAADVWSAGVILYILLSGTPPFWGKTKSRIFEAVKAASLKFPLEPWDRISESAKDLIRGMLCTDPSRRLTAQEVLDHCWMKSNQTNTDQLGEHKTGSCEEWDVGGSSFSASFMSRNQDISFGTDSPTCVAQSPTFTCRSSFSSFLVEPITPYLVSGGFSFQSADDSPGLEFSSPIPSMLSFSFLSPSSVVEQKSCKLECTANMSDVNAIAGETNLEKLFLLQDSPLCIGDNVKETNRKPLEAKRASGMNGHKVLGIHSKRNRTIGLGECEQLDLMVTESVIRWSSCTQLPTSLRSSLVC	519

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste9g01228	519	FunFam	Phosphoenolpyruvate carboxylase kinase	129	316	-	-
	Pste9g01228	519	ProSiteProfiles	Protein kinase domain profile.	42	300	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pste9g01228	519	PANTHER	SERINE/THREONINE-PROTEIN KINASE	31	314	-	-
	Pste9g01228	519	ProSitePatterns	Protein kinases ATP-binding region signature.	48	75	IPR017441	GO:0005524
	Pste9g01228	519	Gene3D	Phosphorylase Kinase; domain 1	43	128	-	-
	Pste9g01228	519	FunFam	Calcium-dependent protein kinase 1	44	127	-	-
	Pste9g01228	519	SUPERFAMILY	Protein kinase-like (PK-like)	39	369	IPR011009	-
	Pste9g01228	519	Pfam	Protein kinase domain	44	300	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pste9g01228	519	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	162	174	IPR008271	GO:0004672\|GO:0006468
	Pste9g01228	519	CDD	STKc_CAMK	41	299	-	-
	Pste9g01228	519	Gene3D	Transferase(Phosphotransferase) domain 1	129	322	-	-
	Pste9g01228	519	SMART	serkin_6	42	300	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste9g01228	Pste-Chr9	10396986	10400083	Dispersed/Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pste9g01228	29	323	EF-hand Containing Proteins	AT3G57530	47.973	1.75e-98	302

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CAMK_CDPK	Pste9g01228		Pkinase	8.2e-72	CL0016