Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste9g01197 CTCTTGTTCCTCGTGGCATTCTCTTCTTGTGAGTTAAGTACACGCGCTGAATCCGCTGCACCGCCAGCGGCGGCTCATGCAGCTTCCAAAGGAGTCTCCACCGGAACAACACTTTCCATGTTACTCATCATCTTCATCTCCGCCTTGTGCATCACCGCATTCTGCTCCATCTACATTCGCTACTGCTCCTACGAACACCAACTCACCATCCCGCAGACCGTGCGCGCCACGCGCGGACTCGACCAGCGCGTGCTGGCCACGTGTCCCGTCATGTCCTACTCCTCACTCAAACTGAGACAGTTCAAGTTGCCTCAAAACGCTGAGCCTCAGTGCGCGGTGTGTTTGGCGGAGTTCGCGGAAGCCGACGTGCTTCGGTTGCTGCCCAAGTGCGGGCACGTGTTCCACCAGGTGTGCATCGACGCGTGGCTGGCGGCGCACGTGACATGCCCCGTGTGTCGCGGCGAGGTGAGCGTGGAAATCGAGGGGGGAACATGTGCTCGCCACGTATTCGATGAAAGTTCTGCGAGAGGTGGCCAAGGTGTCGGAGATGGGAAGGAGAAGAATTTTCGGTTGCTTTTAAGGTCGCACTCGACGGGTCATTCTTTGGAGGGGTTAGCAGTGAAATTGCCTGAGGAAGTGACGAAGATGATTATGGAAGACAGTGAGCGTGAGAGCGTGATGAGGATGAAGCGTTCCGCTAGTTACGACGTCGTTTTGCAGAGCGGCGAAGGTGGTGAGAGTAGTAACAGTAAAGGGAAGAGCAAGAGCAACAGTAATAATAATAATAATTTGTGGGTTTTGTCTCCCTTTGTTTCTCGGGGTTCGGTTATTCTGAGGCTTTGGGGTGTGAGAGAAGAGAAAGAGTGGCAAGGGAGAACGCTTTTCCATTGTGAATTTCGGGGAATGGACGCAAAAATGGGTCTTCCATCACAGAACCAGTGGGCAATTCTCGTTGCTCCTACAGTGGGGAGAGATATTGGAAAGTGTTATAGGAAATTT 999 0.5325 LLFLVAFSSCELSTRAESAAPPAAAHAASKGVSTGTTLSMLLIIFISALCITAFCSIYIRYCSYEHQLTIPQTVRATRGLDQRVLATCPVMSYSSLKLRQFKLPQNAEPQCAVCLAEFAEADVLRLLPKCGHVFHQVCIDAWLAAHVTCPVCRGEVSVEIEGGTCARHVFDESSARGGQGVGDGKEKNFRLLLRSHSTGHSLEGLAVKLPEEVTKMIMEDSERESVMRMKRSASYDVVLQSGEGGESSNSKGKSKSNSNNNNNLWVLSPFVSRGSVILRLWGVREEKEWQGRTLFHCEFRGMDAKMGLPSQNQWAILVAPTVGRDIGKCYRKF 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste9g01197 333 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 32 243 - -
Pste9g01197 333 CDD RING-H2_EL5-like 110 153 - -
Pste9g01197 333 SUPERFAMILY RING/U-box 103 158 - -
Pste9g01197 333 Pfam Ring finger domain 110 153 IPR001841 -
Pste9g01197 333 MobiDBLite consensus disorder prediction 240 260 - -
Pste9g01197 333 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 66 158 IPR013083 -
Pste9g01197 333 SMART ring_2 111 152 IPR001841 -
Pste9g01197 333 ProSiteProfiles Zinc finger RING-type profile. 111 153 IPR001841 -
Pste9g01197 333 FunFam E3 ubiquitin-protein ligase ATL6 69 159 - -
Pste9g01197 333 MobiDBLite consensus disorder prediction 241 260 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste9g01197 Pste-Chr9 9741454 9742496 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste9g01197 1 267 Rapid Response to Elicitors AT3G05200 32.372 1.05e-35 131