Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste9g01182 ATGGAGAACAACCCACTAGAAAAAGCAAAACCAAAATACAGAAAGGGCTTATGGTCCCCTGAAGAAGATAATAAGCTCAGAAACCATATCCTTAAGCATGGTCATGGTTGTTGGAGCTCTGTCCCTATTAAGGCAGGCTTGCAAAGAAATGGGAAGAGCTGCAGACTAAGGTGGATTAACTATCTGAGGCCTGGATTGAAGAGAGGGGTGTTCAGCAAACATGAGGAAGATACAATCATGGCCCTTCACCACATGTTAGGCAACAAGTGGTCTCAGATAGCACAGCATTTGCCAGGAAGGACTGACAATGAGATAAAAAATTACTGGCATTCATATTTGAAAAAGAAAGTGCTCAAAGCTAAGGAAATTGAATCTGATAAACAAATTCAGTATGCTGCTAGCTCTAGTTCAGACGCAATGGACAACTCACTCTCTCCACAGAAACTTGCAACTCAAGATCCAAGTTTTGGACTGTTAGAAAACATGGACAAATCAATAGCACAATCTGATAACTTAATCTCACAAAGCTATAACTTTTCCAAGGAGGCTTGTCAGAGTTCCCTACCAAAACTGTTGTTCTCTGAGTGGCTTTCAGTGGATCATATAAATGGTGGAAGCTCAGTGAACTCTGATGATTCTTTGGTCGTGGGGAATGAATTTGATTCAACTTTCCAAGAAACTATAATGCATATGTTAAGTGAAGAGTATCATCATAATAATCTAATTCACAGTTCAACCACTGAGGTGTACAATTCACAGCTAAAGTCATCAAATCAAGTGGATGGAAGTGATTTCATCTATTGA 804 0.3955 MENNPLEKAKPKYRKGLWSPEEDNKLRNHILKHGHGCWSSVPIKAGLQRNGKSCRLRWINYLRPGLKRGVFSKHEEDTIMALHHMLGNKWSQIAQHLPGRTDNEIKNYWHSYLKKKVLKAKEIESDKQIQYAASSSSDAMDNSLSPQKLATQDPSFGLLENMDKSIAQSDNLISQSYNFSKEACQSSLPKLLFSEWLSVDHINGGSSVNSDDSLVVGNEFDSTFQETIMHMLSEEYHHNNLIHSSTTEVYNSQLKSSNQVDGSDFIY 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste9g01182 267 SMART sant 67 115 IPR001005 -
Pste9g01182 267 SMART sant 14 64 IPR001005 -
Pste9g01182 267 FunFam MYB transcription factor 70 142 - -
Pste9g01182 267 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 62 IPR017930 -
Pste9g01182 267 FunFam MYB transcription factor 12 68 - -
Pste9g01182 267 Gene3D - 70 141 - -
Pste9g01182 267 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Pste9g01182 267 CDD SANT 71 113 IPR001005 -
Pste9g01182 267 CDD SANT 18 62 IPR001005 -
Pste9g01182 267 PANTHER MYB DOMAIN PROTEIN 55 8 238 - -
Pste9g01182 267 SUPERFAMILY Homeodomain-like 13 109 IPR009057 -
Pste9g01182 267 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Pste9g01182 267 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Pste9g01182 267 Gene3D - 15 67 - -
Pste9g01182 267 Pfam Myb-like DNA-binding domain 68 113 IPR001005 -
Pste9g01182 267 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste9g01182 Pste-Chr9 9582489 9585138 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste9g01182 8 201 MYB Transcription Factor Family AT3G48920 53.608 3.23e-62 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pste9g01182 Myb_DNA-binding 7.9e-12 CL0123