Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste9g01170 CTAAACTTTCTGCAATTTTGCTCAACCATCATTTTCTATTGCATAGTTCTCAATTCTCTCTTCATCCTCATCATCATTACAAAGTTCCAAACTTAGTCACTCTGTGGACACCAGTTTTCAAGGAAAAGCATCCTTGTGAAATGTCAGAATCCAAGGAAGAAAATCCTGACCTTCCTCCCAAGTCAAAGCCACAGGATGAACATGGGTTTGCCATGGATTTTGACATTGGCCTTGAAAGTCTATGGCCCTTGGATCATATATCTTTGGTCTCTAACCCCATGTCTCCTTTTCTCTTATCCACTATTTCTGAACAACCTTTTTCTCCTGTCTGGGCTTTTTCTGATGTTGATGGTGAGAAGAACATCAAGATTGCAGCTTCAGGTAATACAAATACAATAACTGAAAATAGAGTTGAACATAGTGACAACAAAAAAACGGCATCACCCCTTGTAGTTCTGCCACCTTCAGAAAATCCAGATGGTTATTGTCTAATCAAGGAAAGAATGACACAAGCACTTCGCCAATTCAAAGAGTTGAGTGAACAGAATGTTCTAGCTCAGGTTTGGGCACCTGTGAGGAATGGAAACCGGTATGCTCTTACAACTTCAGGCCAACCATTTATTCTTGATCCACATAGTAATGGACTCCATCAGTATAGAACAGTCTCCCTGATGTATATGTTTTCTGTGGATGGGGAGAATGACGAAATTATGGGACTTCCTGGTCGAGTTTTTCAGCATAAAATTCCAGAATGGACTCCCAATGTTCAGTATTATACCAGCAAAGAGTATCAGCGCCTAAATCACGCGCAACATTATAATGTTCGTGGAACCTTGGCTCTACCTGTGTTTGAGCTGGCAGGACAGTCATGTGTGGCTGTACTGGAGTTGATAATGACTTCACAGAAGATTAACTATGCTCCTGAGGTTGATAAAATCTGCAAAGCCCTTGAGGTTGGATTCCTGAGTTACCTGCTGTCAGTTTCCTTGCAGGCAGTTGATTTAAGGAGTTCAGAAATTTTGGAGCATCCATACAATCAGATTTGTAACAAAGACCGCCAGTACGCATTAGCCGAGATTTTGGAGATACTGACACTTGTGTGTGAAACTCATAGTTTGCCTCTGGCACAAACATGGGTTCCATGTAAGCATCGGAGTGTCTTGGCACATGGCGGTGGTCTTAAGAAAATTTGCTCAAGTTTTGATGGTTGTTGCATGGGGCAAGTTTGCATGTCGATAACTGAGGTAGCATTCTATGTCATAGATGCTCATACATGGGGTTTCCATGAAGCCTGTGTTGAACATCACTTGCAACAAGGTCAAGGGGTTGCTGGGAGGGCATATTTGTCCCACAACATGTGCTTCTGTGGAAACATTACCCAATTCTGCAAAACTGAATATCCCTTACTACATTATGCTCTCATGTTTCGTTTAACCAGCTGTTTTTCAATCTGCTTACAAAGCTCTCATACAGGGAATGATGACTATGTGCTAGAGTTTTTTCTGCCTCCTAGGATCACAGACTTTAATGAACAAAAGAGATTGTTGGGATCCATACTGGCAACAATGAAACCACATTTTCAGAGTCTTAAGATTGCTTCTGGTGTTGAACTTGAGGAGAATGGTTCAATTGAAATTATAGAAGCAATAAGTGAAAGAGTTTACTTAAGGTTTGAATCAATTCCAATTACTCAATCTTCTACATCACCACCTAGACATGCCTCACCAAATAAGGGGGAGGAGCTGCCACTGGAGTCATCAGAACAGCAAATAATGGCATACTTTGATGGCATAAATGATGGAAGGAATCTTGGTGACAATGCAGGTGGACACATTGATCAGAACACTTCCTTGGAGACCAAAACCAAAAAGAAACCCTCAGAGAGAAAACGTGGAAAATCTGAGAAAACAATTAGTCTTGATGTTTTGCAACATTACTTCACTGGAAGCCTTAAGGATGCTGCAAAGAGCCTCGGTGTTTGCCCTACTACAATGAAGCGCATCTGTAGGCAGCATGGGATATCACGATGGCCATCTCGAAAGATAAAAAAGGTTAACCGTTCCCTGTCCAAGCTCAAGTGTGTTATTGAATCAGTCCATGGAGCTGAAGGAGCATTTGGCTTGAATTCACCAAGTACTAGTTCACTTCCCATTGCCGCCGGTTCCATTTCAGAGCCTTCCACTTCAAACAAGTTCAACCGCCAAACCCCGTTGACCATTAGGCCATCAGAGCCTAAGATCAATGAAAATGATTTTGATGCTTCAAGAGCATCAGAACCAAACAGGCAGGTTGGGGTGGAAGATCAATTCCTAGGTGCAAGGACACAAAGTCCTGAGAAAGTGATTAACAATAAAGGAGGGCCCATTCAGGAGATTGACACTAAAGGCACAAACCATCTCAGAACGAGGAGTGACTCAAGTAGTGAAGGCAGTGCAATTCCTACCCCTTATGGTTCAGGCCAAGGTAGTCCCCCAAATGAAATTTTACCTCCAAAAGATATATTTGTAACAGGCAACAGTGAGCAATGTCTTGTGTTTAAAGAATCACTAGGGTCAATATTGCACTCAACTAATACACCGAACCACACAACTGCATACCCTATACCTAACATTGTTGAAACAAGAGAACCTCAAGAACCATTTGGAGGAGAGCTACTTGAGGGTGCTGGTAGTTCTAAGGACTTGAGAAATCTATGTCCTTCAACAGATGCTGTTTTTGAGGATCAGATTCCAGAAGCTCACATGATGCAACCTCAATGTTCTGGTTTGGCTCCAGTGCCTCACGTGGATACTGTTAATAATTCTGTGACACCTTCTGCAGTTAGGAAGCAGGTGAAGAGTGTGACTATTAAGGCAACATATAAAGAAGATATCATAAGGTTTAAAGTCTCTTTGAACTGTGGTATTGTGAAATTGAAAGAGGAAATTGCCAAAAGATTGAAACTAGAGGTGGGAACATTTGATATCAAGTATCTGGATGATGATCATGAATGGGTTTTAATAGCCTGTGATGTAGACCTGCAAGAGTGCATGGACATTTCAAGATCATCAGGCAGCAACATAATCAGGCTTGTGGTGCATGATATGCCGTCCATTCTTGGAAGCTCTTGTGAGAGTTCAGGAGATTGGAAAGGTTGTATATAGTTTGCTTTGTACTCAAGATTCTTATAGTTGTTAGTGATAGCTTTTTCTCAAAAAAAAAAAAGTTTTCAGATTTGCTCAAATTGCTAGAAACATGCATAATTTAAAAGCAAGTTTCTTTAAGTGGTAATTACTATATCACCCATTGTTCATTGATTATGAGCCACAAAAAACAGAAAAGAAAGGCTTCGATTCTTT 3338 0.4101 MSESKEENPDLPPKSKPQDEHGFAMDFDIGLESLWPLDHISLVSNPMSPFLLSTISEQPFSPVWAFSDVDGEKNIKIAASGNTNTITENRVEHSDNKKTASPLVVLPPSENPDGYCLIKERMTQALRQFKELSEQNVLAQVWAPVRNGNRYALTTSGQPFILDPHSNGLHQYRTVSLMYMFSVDGENDEIMGLPGRVFQHKIPEWTPNVQYYTSKEYQRLNHAQHYNVRGTLALPVFELAGQSCVAVLELIMTSQKINYAPEVDKICKALEVGFLSYLLSVSLQAVDLRSSEILEHPYNQICNKDRQYALAEILEILTLVCETHSLPLAQTWVPCKHRSVLAHGGGLKKICSSFDGCCMGQVCMSITEVAFYVIDAHTWGFHEACVEHHLQQGQGVAGRAYLSHNMCFCGNITQFCKTEYPLLHYALMFRLTSCFSICLQSSHTGNDDYVLEFFLPPRITDFNEQKRLLGSILATMKPHFQSLKIASGVELEENGSIEIIEAISERVYLRFESIPITQSSTSPPRHASPNKGEELPLESSEQQIMAYFDGINDGRNLGDNAGGHIDQNTSLETKTKKKPSERKRGKSEKTISLDVLQHYFTGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKIKKVNRSLSKLKCVIESVHGAEGAFGLNSPSTSSLPIAAGSISEPSTSNKFNRQTPLTIRPSEPKINENDFDASRASEPNRQVGVEDQFLGARTQSPEKVINNKGGPIQEIDTKGTNHLRTRSDSSSEGSAIPTPYGSGQGSPPNEILPPKDIFVTGNSEQCLVFKESLGSILHSTNTPNHTTAYPIPNIVETREPQEPFGGELLEGAGSSKDLRNLCPSTDAVFEDQIPEAHMMQPQCSGLAPVPHVDTVNNSVTPSAVRKQVKSVTIKATYKEDIIRFKVSLNCGIVKLKEEIAKRLKLEVGTFDIKYLDDDHEWVLIACDVDLQECMDISRSSGSNIIRLVVHDMPSILGSSCESSGDWKGCI 1000
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste9g01170 1000 ProSiteProfiles RWP-RK domain profile. 575 658 IPR003035 -
Pste9g01170 1000 MobiDBLite consensus disorder prediction 518 538 - -
Pste9g01170 1000 Gene3D - 897 984 - -
Pste9g01170 1000 PANTHER PROTEIN NLP8 57 994 IPR045012 GO:0003700
Pste9g01170 1000 MobiDBLite consensus disorder prediction 1 22 - -
Pste9g01170 1000 SUPERFAMILY CAD & PB1 domains 900 985 - -
Pste9g01170 1000 ProSiteProfiles PB1 domain profile. 900 982 IPR000270 GO:0005515
Pste9g01170 1000 SMART PB1_new 900 982 IPR000270 GO:0005515
Pste9g01170 1000 MobiDBLite consensus disorder prediction 675 714 - -
Pste9g01170 1000 MobiDBLite consensus disorder prediction 570 588 - -
Pste9g01170 1000 Pfam RWP-RK domain 590 638 IPR003035 -
Pste9g01170 1000 CDD PB1_NLP 901 981 IPR034891 -
Pste9g01170 1000 Pfam PB1 domain 901 981 IPR000270 GO:0005515
Pste9g01170 1000 MobiDBLite consensus disorder prediction 675 696 - -
Pste9g01170 1000 MobiDBLite consensus disorder prediction 732 783 - -
Pste9g01170 1000 MobiDBLite consensus disorder prediction 756 775 - -
Pste9g01170 1000 MobiDBLite consensus disorder prediction 557 588 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste9g01170 Pste-Chr9 9332738 9337434 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste9g01170 252 995 NLP Transcription Factor Family AT4G24020 50.866 0.0 656
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Pste9g01170 PB1 2.9e-18 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste9g01170 9 9332738 9337434 Pste4g02934 4 20722727 20727508 PCT