Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste9g01109 GGAAAGTCTACTCCCTTCTTGTTGCAGTTTTGGCCGGTTCCACTCTCTCTTCTGATACCCATCTCTTCTCTTCTCTTCTCTTCTCTCTCTCAGGTCAATCAATCATTCGTTCCTTCTTCTTTCGTTTCCAATTCCCAATCACTCTCTCACACGCCCTCTCCTTTTCCCTCTCTTCAATCTTCTTCTTTTTCCTCACTCTTCTCTCACCTCATGGCTTCCGATCTCGAAGCACGAGCCAAAGAGGCCTTCGTCGAAGACCACTTCGAGCTCGCCGTCGACCTTCTCACTCAAGCCATTCATCTCGAACCCAACAAACCAGAGCTCTACGCAGACAGGGCACAAGCCAACATCAAACTCAACAACTTCACTGAGGCTGTTGCTGATGCTAACAAAGCAATTGAATTGAATCCTTCTCTACCAAAAGCATATTTGCGGAAAGGTAATGCATGCATGAAGCTTGAGGAATATCAGACTGCAAAGGCTGCATTGGAGATGGGTGCATCACTGTCTCCTGACAACTCAAGATTTCTCAACCTTATCCAAGAATGTGATAAGCTCATTGCAGCAGAAGAATCTTATACCACGCCTATACAGGAAAATACCACAACCCTGGATATGACTCCAAAAGATGTTCTGCAACAGGATGATCTTCCAGAGAAGCCCGCAGTTGCAGTGACAAAACCTAAATATAGGCATGAATTCTACCAGAAACCTGATGAGGTGGTTGTAACCATATTTGCTAAGAAAATTCCAAAGGAAAGCATTACTGTTGACTTTGGTGAACAAATACTAAGTGTTAGTATTAATGTCCCTGGAGAAGATCCGTATGCTTTTCAGCATCGCTTATTTGGAAAGATCGTACCTTCCAATTGTCGGTATGACATTTTGGCCACCAAAATTGAAATTCGCCTTGCGAAAGCAGAACTTATTCACTGGACAACTCTAGAATTCACTAGAGAGATTGTAGTTCCACAGAGGGTTAATACTTCTTCAGTTACTGTAACTCAAAGACCTTCTTACCCTTCCTCAAAATCCACAAAAGATTGGGACAAGCTTGAAGCCCAAGTCAAGAAAGAGGAGAAGGATGAAAAACTTGATGGCGACGCAGCTTTGAACAAATTCTTCCGGGAAATATATCAAGATGCAGATGAGGACACTAGAAGAGCAATGAAAAAATCATTTGTTGAGTCTAATGGGACAGTGCTATCTACAAACTGGAGAGAAGTTGGATCAAAGAAGGTGGAGGGAAGTCCTCCTGATGGAATGGAGCTGAAGAAATGGGAATATTAGGGCATTTTCTGGATTAATGTTATACGTATTATGGTGTGGAATGCTTTTTGTTCATTTGGCTAACTGCTCAACTGAAGATATTTTTTTTGGAATTATTTTGAATTTTCATGAGGTGTGTCGTCTTCGCTAGGGACCTGAATTTAATGGTTATTGGTTGAGGACAAGGCTGTTCTATTTGGTGAATATAATGCAACTTTCTATTTTATGTTCCCTTA 1505 0.4173 MASDLEARAKEAFVEDHFELAVDLLTQAIHLEPNKPELYADRAQANIKLNNFTEAVADANKAIELNPSLPKAYLRKGNACMKLEEYQTAKAALEMGASLSPDNSRFLNLIQECDKLIAAEESYTTPIQENTTTLDMTPKDVLQQDDLPEKPAVAVTKPKYRHEFYQKPDEVVVTIFAKKIPKESITVDFGEQILSVSINVPGEDPYAFQHRLFGKIVPSNCRYDILATKIEIRLAKAELIHWTTLEFTREIVVPQRVNTSSVTVTQRPSYPSSKSTKDWDKLEAQVKKEEKDEKLDGDAALNKFFREIYQDADEDTRRAMKKSFVESNGTVLSTNWREVGSKKVEGSPPDGMELKKWEY 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste9g01109 359 Pfam Tetratricopeptide repeat 37 68 IPR019734 GO:0005515
Pste9g01109 359 Pfam Tetratricopeptide repeat 71 103 IPR019734 GO:0005515
Pste9g01109 359 CDD p23_CS_SGT1_like 163 246 - -
Pste9g01109 359 SUPERFAMILY HSP20-like chaperones 147 254 IPR008978 -
Pste9g01109 359 ProSiteProfiles SGS domain profile. 269 359 IPR007699 -
Pste9g01109 359 Pfam CS domain 161 236 IPR007052 -
Pste9g01109 359 Pfam SGS domain 277 357 IPR007699 -
Pste9g01109 359 Gene3D Tetratricopeptide repeat domain 1 140 IPR011990 GO:0005515
Pste9g01109 359 SUPERFAMILY TPR-like 5 117 IPR011990 GO:0005515
Pste9g01109 359 Gene3D - 153 265 IPR008978 -
Pste9g01109 359 ProSiteProfiles CS domain profile. 157 246 IPR007052 -
Pste9g01109 359 ProSiteProfiles TPR repeat profile. 36 69 IPR019734 GO:0005515
Pste9g01109 359 FunFam Protein SGT1 homolog 1 132 - -
Pste9g01109 359 PANTHER PROTEIN SGT1 HOMOLOG 1 357 IPR044563 GO:0051087
Pste9g01109 359 SMART tpr_5 2 35 IPR019734 GO:0005515
Pste9g01109 359 SMART tpr_5 70 103 IPR019734 GO:0005515
Pste9g01109 359 SMART tpr_5 36 69 IPR019734 GO:0005515
Pste9g01109 359 FunFam Protein SGT1 homolog A 155 259 - -
Pste9g01109 359 ProSiteProfiles TPR repeat profile. 70 103 IPR019734 GO:0005515
Pste9g01109 359 Coils Coil 42 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste9g01109 Pste-Chr9 8172300 8177277 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste9g01109 1 101 U-box Gene Family AT3G07370 30.476 5.53e-08 51.6