Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste9g01057 ATGGTTGTCCTCTTTAATTCAAACCTTAGTTTTGCAAAGCAATCTAAGATAAATGGCTTGAAAATGAATGTTATTGATCGATGTTGGAGACCAAATCCTGAATGGAGGACATATCGGTTTCAAATGGCCACATGTTCTGTGGGCTATGCTGGCAAGATGACAAACAACATTGGTAAAAACCTTATTCATTATACAGTTACTGACCCTAGTGATGATCCTATAAATCCTAAACCTGGCACCTTAAGGTATGGAGCTTCTGTGATTCAAGATAAAGTATGGATCACATTCGAAAAAGATATGTACATTAAACTAGAGAAATCTCTTCTCATTAGTAGTTTTACCACCATTGATGGTCGAGGTGTTAACGTCAACATTGCTAATAATGCATGCTTAATGATATTTAAGGCCACCAACATAATCATCCATAGCATTCGAGTTCATCATTGTAAACCTCAAGCTCCTGGGTTCGTGATGGGGCCTGAAGGAAAGGTAATTCCTTTAGGCCAAGTGGATGGAGATGCTATTAGATTGGTTACTGCTTCAAAGATTTGGATTGATCATAATACGCTTAATGATTGCCAAGATGGTCTACTTGATGTCACACGAGGTTCCACAAATGTAACTATCTCTAATAATTGGTTTAGAAACCAAGACAAGGTTATGCTTCTTGGGCATGATGATGGGTATATAAGGGACCAAAACATGAAAGTTACTGTTGTTTACAACCATTTTGGACCTAATTGTAATCAACGCATGCCAAGGATTCGACATGGATATGCACATGTAGCCAATAATCTTTACCAAGGATGGTTGCAATATGCCATTGGCGGAAGCATGAAACCTAGTCTCAAAAGTGAAGCTAACATTTTCATAGCACCAAGAACAGGAAGTAAAGAGGTAACATGGAGAAAGAGCACAGATAAAAATGGGGATAGATGGGAATTTCATTCTGTGGGAGATATTTTTGAAAATAGAGCTTCATTTGCAGTAACAAAAGGAGGGCGTGTGCCAAAACCAAATTATAATAAGGAACAAAGTTTTAAAGTAGCTGATGCCAAATTTGTAAGATCATTAACACGATCATCCGGCGTGTTACGTTGCGACTAA 1107 0.3794 MVVLFNSNLSFAKQSKINGLKMNVIDRCWRPNPEWRTYRFQMATCSVGYAGKMTNNIGKNLIHYTVTDPSDDPINPKPGTLRYGASVIQDKVWITFEKDMYIKLEKSLLISSFTTIDGRGVNVNIANNACLMIFKATNIIIHSIRVHHCKPQAPGFVMGPEGKVIPLGQVDGDAIRLVTASKIWIDHNTLNDCQDGLLDVTRGSTNVTISNNWFRNQDKVMLLGHDDGYIRDQNMKVTVVYNHFGPNCNQRMPRIRHGYAHVANNLYQGWLQYAIGGSMKPSLKSEANIFIAPRTGSKEVTWRKSTDKNGDRWEFHSVGDIFENRASFAVTKGGRVPKPNYNKEQSFKVADAKFVRSLTRSSGVLRCD 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste9g01057 368 Gene3D - 22 366 IPR012334 -
Pste9g01057 368 PRINTS Pollen allergen Amb family signature 107 123 IPR018082 -
Pste9g01057 368 PRINTS Pollen allergen Amb family signature 313 337 IPR018082 -
Pste9g01057 368 PRINTS Pollen allergen Amb family signature 251 270 IPR018082 -
Pste9g01057 368 PRINTS Pollen allergen Amb family signature 70 95 IPR018082 -
Pste9g01057 368 PRINTS Pollen allergen Amb family signature 171 192 IPR018082 -
Pste9g01057 368 PRINTS Pollen allergen Amb family signature 273 292 IPR018082 -
Pste9g01057 368 PRINTS Pollen allergen Amb family signature 344 367 IPR018082 -
Pste9g01057 368 SUPERFAMILY Pectin lyase-like 22 343 IPR011050 -
Pste9g01057 368 SMART amb_all 99 296 IPR002022 -
Pste9g01057 368 Pfam Pectate lyase 109 290 IPR002022 -
Pste9g01057 368 PANTHER PECTATE LYASE 18-RELATED 20 367 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste9g01057 Pste-Chr9 7479180 7480596 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste9g01057 53 300 Polysaccharide Lyase AT5G09280 70.565 2.17e-140 399