Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste9g01048 ATGGCAAAGGTAAGGGAGAAGCTATACGTCACCGTTCCGAGTCTGTTTCGGTGCCCAATTTCCATGGACGTGATGCGGTCCCCAGTAAGCCTCTGCACCGGCGTCACATACGATCGCGCCAGCATTCAGCGCTGGCTCGACTCAGGACACGACACGTGTCCCGCCACCATGCAGGTTCTTCCCTCCAAAGACTTCATCCCCAATCTCACGCTCCACCGCCTCATCCACCTCTGGCTCCTCTCCGCCGAACCTCCCTCGCCGGAGCACCGCTCCTCCGCCGACCACCTCCGTTCTCTCCTCCGTCGAATCCAAACCGCCGACGAAGACCTCGCCGCAACCCTCTCCAAAATCGCCGAATTCGCTAAAATTTCCGGCGAGAATAGCCGGATTCTCGCTTCCTTCCCTGGTTTTGACTCCGCCTTGGTCCGCGCCCTCGCTGGAAGCAATTCTCGGATCAACGCTGCGGAAAACGCGATCTATCTTCTGGATTCGGGTGCTGGAGTTTCTCGTGTGCGATTTTCAGTCCTCGAAATCGATCGCGGAGACGCGAGGATTGTTGTCGTTGGTCGTGAGTTTTTAAAGGACGGCGGAGAAGAACTAAACGACGCCGTGTTGTCGTTGCTCGGTGTCGTTTCGGTGACTCAGTCCGCGAAGGTTGAACTCGTGAATTCCGGAGTGGTCGAAGCGGTTTCGAAAATGATACCAGCGTGTTCCGCGGCAACGGCGGGGCGGTGTCTGAGAGTGTTGGCAGTGGCGGCGACGTGCGCGGAGGGGCGGGCGGCGATGGCGGCGGAGGCGTCGTGCGCGGCGGCGGTGGTGGAGAGATTGGCGAAGGCGCCGAAGGCCGCGGCGGAGGACGCTGTGGCGGTGCTGTGGAGCTTGTGCTGTTTGAGCGGGAACGTGAAAGTGAGGGATGACGTGGCAAAGCGAAACGGCGTGGCGGTGATTTTGTTAGCTATGCAGAGAGGTTGGGAGGAGCACGTGAGGAGCATGTGCGTGGATTTGATTAAGGTTTTGAAGGGTGCGTGCAAGAATAACGGGTTGGGGTTGGAACTAGGAATCTATGACACCAAAACCACTCATATCAAACCTTGTTAA 1098 0.582 MAKVREKLYVTVPSLFRCPISMDVMRSPVSLCTGVTYDRASIQRWLDSGHDTCPATMQVLPSKDFIPNLTLHRLIHLWLLSAEPPSPEHRSSADHLRSLLRRIQTADEDLAATLSKIAEFAKISGENSRILASFPGFDSALVRALAGSNSRINAAENAIYLLDSGAGVSRVRFSVLEIDRGDARIVVVGREFLKDGGEELNDAVLSLLGVVSVTQSAKVELVNSGVVEAVSKMIPACSAATAGRCLRVLAVAATCAEGRAAMAAEASCAAAVVERLAKAPKAAAEDAVAVLWSLCCLSGNVKVRDDVAKRNGVAVILLAMQRGWEEHVRSMCVDLIKVLKGACKNNGLGLELGIYDTKTTHIKPC 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste9g01048 365 SUPERFAMILY RING/U-box 8 81 - -
Pste9g01048 365 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 92 IPR013083 -
Pste9g01048 365 PANTHER WDSAM1 PROTEIN 140 345 IPR045185 GO:0061630
Pste9g01048 365 Gene3D - 185 350 IPR011989 -
Pste9g01048 365 SUPERFAMILY ARM repeat 191 340 IPR016024 -
Pste9g01048 365 CDD RING-Ubox_PUB 13 65 IPR045210 -
Pste9g01048 365 ProSiteProfiles U-box domain profile. 11 85 IPR003613 GO:0004842|GO:0016567
Pste9g01048 365 Pfam U-box domain 12 81 IPR003613 GO:0004842|GO:0016567
Pste9g01048 365 SMART Ubox_2 15 78 IPR003613 GO:0004842|GO:0016567
Pste9g01048 365 FunFam RING-type E3 ubiquitin transferase 4 83 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste9g01048 Pste-Chr9 7328327 7329551 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste9g01048 6 364 U-box Gene Family AT5G09800 34.450 8.82e-67 214