Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste9g01016 ATCTTCTTTTTTTTCTAGAACTAGAATGCTAAAAATTTTTAATTTTTGCAATTGATTTTGTTTCTGCAGTCTTTTGGTTTTGCTTTGTTTTAGTCTCTTGTTTATTTTATTTTTTTCACCGTTTTTTCTTCTCAACTGTGATTGGAGTGTTGACCTGGAATTTTCTTGGTCTAATCAACCGTTTCTCAAGTTTCCTCTTCTGGGTTCTCATATTTGCTTCTTAAAGTTCCATTTTTCTTATTCTAGTCTGAGTTTTCGTGGAATTTTCATTTTGGCTTAATTTGGTGTCTTTTATCTCTTGCTATTAGGGTGGGTAGAAAGCCTTATTTCTCGGTGAAGTTTGGTATTTGAGCTCTTCCCTTCCACTCCTAATGCTTGTGACTTGTGACATCTGACTAGAGTGAATTAGTGGAACATTATCACCATTAAGTGGTGGTAGTCACATTAAATTCTTGGGCTGTTAGTGTGTTGTAGCAGATGTCCTTCCGCAGTATTGTTCGTGATGTAAGGGATGGATTTGGAAGCTTATCAAGGCGCAGTTTTGATGTAAGGCTTCCTGGTGGGTGCAAGTCCAATAGTTCGGTCCATGAGGTGCATGAACACCGGCCGTTAATCCAGAACAGCCGGTGGGCTAGCCTGCCTCCGGAACTTCTTTGTGATGTTATTAAAAGATTGGAAGAAAGTGAGAGTACATGGCCTGCTCGGAAGCATGTGGTTGCATGTGCTGCTGTGTGCAAGTCCTGGAGAGAAATGTGCAAAGAAATTGTTACCAGTCCTGAGTTCTGTGGGAAGATTACTTTCCCTGTTTCCCTGAAGCAGCCTGGTGCAAGGGATGGAACCATCCAGTGTTTCATCAAGAGAGACAAGTCTAATCTGACCTACCATCTATTCCTTTGTCTTAGTCCAGCATTGCTAGTTGAAAACGGAAAGTTTCTTCTTTCTGCAAAACGAACCAGAAGAACAACATGCACAGAGTATATTATATCAATGGATGCTGATAATATATCAAGATCTAGTAGCACTTACATTGGAAAACTGAGGTCAAATTTTCTCGGCACCAAGTTTATAATTTATGATACACAGCCTCCCTATAACAATTCTCAGCAGTCTCCTCCAGGCCGAAGCCGAAGGTTCTATTCAAAAAAGGTTTCTCCAAAGGTCCCAAGTGGCAGCTACAACATAGCTCAGATCACTTATGAGTTGAATGTCCTTGGTACTAGGGGCCCTCGCAGGATGAACTGCACCATGTACTCAATCCCTACATCAGCCCTTGAGCCTGGTAGCACTGTCCCAGGCCAGCCAGAGCTCCTTCCGCGCTCCCTCGAAGACTCGTTCCGGAGCATATCCTTTGCCAGATCAATCGACTCAACCGAGTTTAGCAGCTCCAGATTCTCTGACATACTTGTGGCAGGCAATGAAGATGAGCAGGGAAAGTGCAGGCCTTTAGTTCTCAAGAACAAATCACCAAGATGGCATGAGCAGCTGCAGTGTTGGTGCCTCAACTTTAGGGGGAGAGTGACTGTTGCCTCTGTCAAGAATTTCCAGCTGATTGCTGCGACGCAGCCTCCTGCAGCCGGTGCTCCAACTCCGTCAGCACAGCCAGCTCAGTCTGATCATGACAAGATCATTCTTCAATTTGGCAAGGTTGGCAAGGATATATTTACTATGGACTACAGATACCCCCTTTCTGCATTTCAGGCTTTTGCCATTTGCTTGACTAGCTTTGACACAAAACTGGCTTGTGAATAGTGACAATGAGGTAAGATACAAAGACAATAGGATTCTATGATTCTATCTCCATTTATGTTTTCACTGGGTGGTAAAGCTGCATGGAATCATTATACACCTTAGTTTAACTGTAAAGGACAGAACAACCTTTGCTCAATGTAATTTTTCTTAGAGTTTAACACCTATGAAGTGACAGTTTAAAAGAGTTACACTGACGTTTAATCACAACTCTTTTATATGATTTAGAAAGTATTAATTGGTAAAATCAATATACTTACTATATATACAAAGTTGTGATTAAATGTCAATATAAAACTTTTTAGACTCACAATGTATAAGTGTTTTTCTCTTTTCTTTGTATGTTTTTCCATAATCCTTTTCCCCTCATGTTTGTATGCAAAAAACTTTCTGTCAAACATGTGTTGCTTTCCCCCCAGTGTAATAGGTTTCTTCTAATACCATGCTCTCCTGGCCAAAAAATATATTAGTATGTTTTG 2225 0.4081 MSFRSIVRDVRDGFGSLSRRSFDVRLPGGCKSNSSVHEVHEHRPLIQNSRWASLPPELLCDVIKRLEESESTWPARKHVVACAAVCKSWREMCKEIVTSPEFCGKITFPVSLKQPGARDGTIQCFIKRDKSNLTYHLFLCLSPALLVENGKFLLSAKRTRRTTCTEYIISMDADNISRSSSTYIGKLRSNFLGTKFIIYDTQPPYNNSQQSPPGRSRRFYSKKVSPKVPSGSYNIAQITYELNVLGTRGPRRMNCTMYSIPTSALEPGSTVPGQPELLPRSLEDSFRSISFARSIDSTEFSSSRFSDILVAGNEDEQGKCRPLVLKNKSPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATQPPAAGAPTPSAQPAQSDHDKIILQFGKVGKDIFTMDYRYPLSAFQAFAICLTSFDTKLACE 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste9g01016 423 FunFam Tubby-like F-box protein 108 423 - -
Pste9g01016 423 ProSitePatterns Tub family signature 2. 408 423 IPR018066 -
Pste9g01016 423 PANTHER TUBBY-RELATED 42 421 - -
Pste9g01016 423 SUPERFAMILY F-box domain 42 95 IPR036047 GO:0005515
Pste9g01016 423 Gene3D - 46 98 - -
Pste9g01016 423 ProSitePatterns Ribosomal protein L34e signature. 16 29 IPR018065 -
Pste9g01016 423 CDD F-box_AtTLP-like 51 95 - -
Pste9g01016 423 Pfam Tub family 112 418 IPR000007 -
Pste9g01016 423 ProSitePatterns Tub family signature 1. 343 356 IPR018066 -
Pste9g01016 423 Pfam F-box domain 51 97 IPR001810 GO:0005515
Pste9g01016 423 FunFam Tubby-like F-box protein 46 99 - -
Pste9g01016 423 Gene3D Tubby Protein; Chain A 108 423 IPR025659 -
Pste9g01016 423 PRINTS Tubby superfamily signature 232 259 IPR000007 -
Pste9g01016 423 PRINTS Tubby superfamily signature 380 399 IPR000007 -
Pste9g01016 423 PRINTS Tubby superfamily signature 343 359 IPR000007 -
Pste9g01016 423 PRINTS Tubby superfamily signature 183 207 IPR000007 -
Pste9g01016 423 PRINTS Tubby superfamily signature 325 342 IPR000007 -
Pste9g01016 423 PRINTS Tubby superfamily signature 401 423 IPR000007 -
Pste9g01016 423 PRINTS Tubby superfamily signature 167 183 IPR000007 -
Pste9g01016 423 SUPERFAMILY Tubby C-terminal domain-like 100 423 IPR025659 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste9g01016 Pste-Chr9 6702985 6707162 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste9g01016 1 423 TUB Transcription Factor Family AT1G76900 69.869 0.0 602
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Pste9g01016 Tub 2.3e-116 CL0395
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste9g01016 9 6702985 6707162 Pste9g01016 9 6702985 6707162 ECH
Pste9g01016 9 6702985 6707162 Pste4g02609 4 18428750 18431835 PCT