LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste9g00985	ATTTTGCACCCCTTTTGCACCCCCTTTATTATATAACCGTTTCATCCTCACTAGCATTCCAAAGGGTGTCCGAAGAAGGAATAACACAAGAAAATTTTCGGGTGGATCTTGATAATTTAATTTTTTCCAAGAATAGGAAGAAAAACCATAGTTAATACTTTTCATGTCCTTGCTAACGGTGGCGCACCAAAGGGGGTCAGGTGAGTTTATCCGGTTCACGGCGGATCATGGCGGGGATGGTCGTGACGGTGAGTATGGCTATGAGCATGATGGTGATGGTGGCGGCGGTGGTGTTTCATTAGGATTGAATTTTAGCCAAGTGATGCAAGAAGGTGGTGTGACAATGCAAGGTGGTTCTTTGGTTTCAGGGTACAACAGGGGTGATCCAGAGTCGAGAGAAATAGTTTCAGCTTTGACACACGTGGTGTCGTCAGGGTCTGGCCAGAGGAGCACCGAATGGATTCAGCAAAGTGGTTTTCCTATGATGTCTGGTTTTGGACAACCATCTTCTCTTTCACGTTTGTCTTCTTTCTCTTCTCCTTCTGCCACCTCTTGGGTTGGTCAAAAAAGAGGAAGAGAAGAAGAAGAGAGTAGCTCTTCCCATAACATGATGCAGCAGCAGCAGCAACAACAACAAAGTGCTCCAAGGCTCTTTAGAAACATTGGTGATTTCACGCTTCCTTCTCAAGGAGACACATCTTCAGTGACTGAAGAAGCCCCCACCTCAACAATTACAACCGTAACCGCCGTGGCGACGGTGGTTACTGAAACCCCAGCTGGAGGTGGGGAAAGGAGGAGAAAGTACAGGGGAGTGAGGCAGAGGCCATGGGGGAAATGGGCAGCTGAAATCCGTGATCCACACAAAGCAGCAAGAGTTTGGCTTGGCACATTTGACACAGAAGAAGCAGCAGCAAGAGCCTATGATGAAGCTGCATTGAGGTTCAGAGGCAACAGAGCTAAGCTAAACTTTCCTGAAAATGTTAGAGCAGTTCCAACTATTCAACCTTTTCAAGCCACCACCAGACTAACAGCTTCTGACTCCTCCACCTCTCAATTCCGGCCACTCTCCGCCACAGTGGCACCTCCCTTCATCCAGCAGCCACCACCGATTCAGGGCTCCTCTGACTTGATCAGAGACTACTTGCAATACTCTCAACTTCTACAGAGTGATTTTCATCAGCAACATCTTCATCACCAAGAACAACCTTCTAGTTTGCTTCAGCAGTTGTACTATAATGCACAATTGGCTTCACTTCAATCACAATCACCTTCAGTTTTATCATCATCGCCTTCATTTTCTACTTCTGTGTCAACAACACCATTCCCATTATTCTCAACTTCTTCTCAATTTTCCTCTGCTTCTTTTCCCTTGTTTTCAAGTCAACAAATGGGCTATTTCCAGCCACCGGATATCCACCACCCCGCTGGCGGCGGACCAGAGTTTCCGCCGCCAACATGGTCGGATACCAGTAGCCAGCCGCCACCTTCTGGTTGATACAGTGTTTCACTTTCCTTCATATTTTCCTTTCATACTTAGGATAAAAAAAAAGTAAGACTTGTTTTACTCATTTCCTTTTTTAAGGGTAAAACTTAGATATAGTTTTTAAAGTATTTTAAGTATTATTTTTCAATCAAAATTAGAGTTTCACTTCCGTAGTTTATACAGACATTTGATGTAATTTTTCATTATTCAAATGGTCAAGTGAAACTCCAATTATGATCAGAAAACTATACTGAAAGCTACCAACTAACTTTATCTAAGTTTTGTACCTTATTTTAAACGGTGGTAAATTCCTTGAACATGAAGTTTTGGAGTTAACTATTGTTTTGTTCCTATTGATGTAAAGAAGATTATTTGAAAACAGAAAAGGTGGAGTGATTGAGGGTTGATGAATGATAAAGGGTGGCATGTAAAGACAAAGCTACATTTAGGTTTTAGGAGCTTATTTCCAGTTTCAATGCATTTTGATGTTAACATTCACTCAGTTATCCATGGAAAGACGTATAAACCCATAGCTTTTACATACCCTGTCTGCTATCTGCTATACAGCCACAGATTTTATCAAAATGTTCCTATACTTTAGTTCTTTT	2091	0.4232	MSLLTVAHQRGSGEFIRFTADHGGDGRDGEYGYEHDGDGGGGGVSLGLNFSQVMQEGGVTMQGGSLVSGYNRGDPESREIVSALTHVVSSGSGQRSTEWIQQSGFPMMSGFGQPSSLSRLSSFSSPSATSWVGQKRGREEEESSSSHNMMQQQQQQQQSAPRLFRNIGDFTLPSQGDTSSVTEEAPTSTITTVTAVATVVTETPAGGGERRRKYRGVRQRPWGKWAAEIRDPHKAARVWLGTFDTEEAAARAYDEAALRFRGNRAKLNFPENVRAVPTIQPFQATTRLTASDSSTSQFRPLSATVAPPFIQQPPPIQGSSDLIRDYLQYSQLLQSDFHQQHLHHQEQPSSLLQQLYYNAQLASLQSQSPSVLSSSPSFSTSVSTTPFPLFSTSSQFSSASFPLFSSQQMGYFQPPDIHHPAGGGPEFPPPTWSDTSSQPPPSG	443

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste9g00985	443	MobiDBLite	consensus disorder prediction	171	188	-	-
	Pste9g00985	443	MobiDBLite	consensus disorder prediction	110	132	-	-
	Pste9g00985	443	CDD	AP2	213	272	IPR001471	GO:0003700\|GO:0006355
	Pste9g00985	443	MobiDBLite	consensus disorder prediction	421	443	-	-
	Pste9g00985	443	MobiDBLite	consensus disorder prediction	110	188	-	-
	Pste9g00985	443	SMART	rav1_2	213	276	IPR001471	GO:0003700\|GO:0006355
	Pste9g00985	443	FunFam	Ethylene-responsive transcription factor 2	212	271	-	-
	Pste9g00985	443	PRINTS	Ethylene responsive element binding protein signature	214	225	IPR001471	GO:0003700\|GO:0006355
	Pste9g00985	443	PRINTS	Ethylene responsive element binding protein signature	236	252	IPR001471	GO:0003700\|GO:0006355
	Pste9g00985	443	MobiDBLite	consensus disorder prediction	411	443	-	-
	Pste9g00985	443	Pfam	AP2 domain	213	262	IPR001471	GO:0003700\|GO:0006355
	Pste9g00985	443	ProSiteProfiles	AP2/ERF domain profile.	213	270	IPR001471	GO:0003700\|GO:0006355
	Pste9g00985	443	PANTHER	DNA-BINDING DOMAIN	148	347	IPR044808	GO:0003700\|GO:0009873
	Pste9g00985	443	MobiDBLite	consensus disorder prediction	146	164	-	-
	Pste9g00985	443	Gene3D	AP2/ERF domain	212	272	IPR036955	GO:0003700\|GO:0006355
	Pste9g00985	443	SUPERFAMILY	DNA-binding domain	213	271	IPR016177	GO:0003677

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste9g00985	Pste-Chr9	6348727	6351425	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pste9g00985	210	278	AP2-EREBP Transcription Factor Family	AT2G33710	78.261	1.71e-33	124

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Pste9g00985		AP2	3.3e-15	CL0081

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Pste9g00985	9	6348727	6351425	Pste9g00985	9	6348727	6351425	ECH
	Pste5g00451	5	2948709	2961214	Pste9g00985	9	6348727	6351425	PCT
	Pste9g00985	9	6348727	6351425	Pste4g02569	4	18132665	18134142	PCT