Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste9g00940 GTACGTTTTATCTATTGTCTCACCCTAATCCCATCCATGGCGGGAGCCACAGGCAGAACCCTATTCACTCTCTCCCTCACGCGCTTGCTTCCCAAGCGCGTCCCACTCCCTCTCTTCCCTCGCCTCCGCCCCCTCTGTTCCGTTGCCTCCGCCGCGGCGGAAACCGTGGACGCGAAGCACTCTCTGCTCCTGGAGAGGCTCCGGTCGAGACACCTGAAGGACAGCGCGAAAAGCGTCCCTGAAGCGAGGAAGAAAGTGAAGCATGTAGCGGAAGAGGAGAAAGAGAGGAAGAAGGAGGTTGCGAGTTTCGAGGAGTTGGGACTAAGTGAGGAGGTTATGGCTGCTGTTAAGGACATGGGCATTGAAGTGCCCACTGAGATACAGGGTATTGGCATCCCCGCCGTTTTGGACGCTAAGAGTGTCGTTTTGGGGTCCCATACTGGCTCTGGCAAAACCCTCGCCTACTTGCTTCCCCTTGTTCAGTTGCTAAGACGGGACGAACAATTGAATGGAATACTTTTGAAGCCTAGGCGCCCACGAGCTGTTGTGCTGTGTCCTACTAGGGAGTTATCTGAGCAGGTTTTTCGAGTTGCAAAATCAATTAGCCATCATGCACGGTTTAGGTGTACCATGGTAAGTGGTGGTGGCCGGATTAGGCCTCAGGAGGATTCACTTAATAACCCCATTGATATGGTAGTTGGTACCCCTGGCAGGGTTCTTCAACATATTGAGGAGGGAAATATGGTATATGGTGACATCAAATATGTGGTATTGGATGAGGCAGACACAATGTTTGATCGAGGCTTTGGTCCTGATATACGCAAATTTCTTGGCCCATTAAAAAATCGTGCTTCAAAACCTGATGGCCTTAGTTTTCAGACTATCTTGGTAACTGCAACCATGACAAAGGCTGTGCAAAAGCTGATTGATGAAGAGTTTCAAGGCATTGTTCATCTGCGCACATCGACATTGCATAAAAAGATTTCTTCTGCTCGTCATGATTTCATTAAACTCTCTGGTTCTGAGAACAAGCTTGAAGCATTACTTCAGGTACTTGAGCCAAGCCTAGCAAAAGGGAACAGGGTGATGGTTTTCTGCAATACACTAGATTCAAGTCGTGCTGTGGATCATTTTCTTGGTGAAAATCAGATTTCTGCCGTGAACTACCATGGGGAGGTACCAGCAGAGCAAAGAATTGAGCTGCCTAGAAATAGGTATATTGTAACTGTTGAAAGATGGAAAGGTGATTGGACTCCTCTAAACTCTAAATTAAGGAGATATGTAAAGGTTGAAAATCTCAAAAAGTTTAAGAGTGATGATGATGATTGTCCTACATTAGTTTGCACGGACTTGGCTGCTAGGGGTCTGGACTTGGATGTAGATCATGTTGTTATGTTTGACTTCCCCTTGAATTCTATTGACTATCTTCATCGCACGGGTAGAACGGCTCGGATGGGTGCAAAAGGGAAGGTAACAAGTTTAGTTGCTAAGAAGGACTTGGACTTGGCCAGCAAAATAGAGGAAGCAATAAGGAAGAATGAGAGTTTGGATGCTATCAGAAAGGAAAGTGTCCGAAGGAGCACTGCAAGGACCCAAGTCACTGAGCAGAAGGAAAAGACCAAAAAACTGGTTAAAGTTTCAAATTTTAAGGGCAAATCTAGTGCTCGAACCAGTTCTGGGAATAGGTCAGGTATGAAATATGCTAAAGGGTCTCCTGTAAAATCTATTAAGAAAGGGGTTTATATTTCAAAATCTGGGAAATCTTCTAGTGCAAGTAGCTTCAGTAAAGGTTCTTCAGAGAAGACGCAAACAAGTAAAATGGTCAATGCCACCAAATCTACAAATTCTAAACTCAATGTTGTGGGTTTAGGGGCAAAAATTCATCATCAAATAATAAAGAACCGGGTTTGTGAAGTGGATTGTGGAGCACATTGTACTAAGTACATAGTAACTGGTTCTCGTTTTTGTATTAGATCAGATTTTTCCGCAGATAATAATATATTGGTTTTTCATGGCATTGATTATAGGTAAGATTGTACTTGGTACAAAAAGTTATTATATCATGTTGGTGCATTTTAAGCAAATGGAAGAAGGACAATCAAGTGATTCAGTGAGTGAAAAAAATATTTAGAAACACAATTAAGTAAGATGCTTCAAGATGTGGAACCTCTAGAAAAGGTTGAACTTCATTAGGAGTACCCCAAAAGTCTTCGTGAAATTAATTCAAAAGTCTATACACTTTGAATTGTTTCCATTGGCTTTTTTTCACAAAGCAATTGATATTGGTAAGGAAGAACATTCTTGAGCCAATGGAAGAACCTAAATAGAAATATCTCAAGTGACTTTCTAAGTTGAACACAAGTACTCTCTGAAGATATTGTTGTCCTACTTAAAGAGATTGAAGAAGAAATCCAAAGTTATTATGGTTAGAGATTCTAATTAATGCTTGTTTCATGATTGAATTTTTTTTAAGATTTCATACATTCAATGTTTGGGATGGAAAATTGGGATGGAAATAATCATTTGTTGTTAAAACCATGGACGTGAACGAATATTAGGAAGGACTTGATCCTACTTCAAAATCAACTTCTTTTCTTTGTTCTTGAATAGATTTACGTCATTGGTGTAAATGTGAAATTTCCTTCCTTGCAATTTCTTTCAACTATTTTTATGACAATTGTTTGGAACCATGTGTCCATTGCTTTGTGAATATGGAAGAGCTTAATTCAAAAGCCTCCATACCTCAAATTGTTTACATTAACCCTCTCCACAAAGCAATTGATACCGGTAAAGAAGAACATTTTTTGAGTCAGTGGAAGAGCTTAGTATTTGTCTCGCTGAATCACTTGATTGTCCTTCTTTAATTTGTTAAGTGTTTTGGGAACTCTCTTGGACACATGGTCCCCAAACAATAGCCAGAAAAATAATCAAAAGAATTAGCAAGAAAGGAAGGAAATTTCATATTCATACCAGTGAAGTTGTAGATCTGTTCAACAACACAAAAAGAAACTTATTCTCAAGCAGAGTCAAATCCTTTATAATATCCTGTTCGTCTCCATGGTTTTAGCAACAAAGGTTCCTTTCCCCTCCGGTCATTGAATTTATGAAATCTTAGAAGAAGCTCAATTATGAAAAGAATAGATTAGAATCATCTCTAAGACATGGTCGCTATACTTCACAGGCGTTCCATAATAACTTTGGATTTCTTCAATATCTAAGTAGCACAACAATTTCTCCAACTGGTACTTGGGTTTCATTTAGAAATACCTTGAGATGTTTCAATTTAAACTCTTTCGTTGATTCAAG 3306 0.4011 MAGATGRTLFTLSLTRLLPKRVPLPLFPRLRPLCSVASAAAETVDAKHSLLLERLRSRHLKDSAKSVPEARKKVKHVAEEEKERKKEVASFEELGLSEEVMAAVKDMGIEVPTEIQGIGIPAVLDAKSVVLGSHTGSGKTLAYLLPLVQLLRRDEQLNGILLKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRCTMVSGGGRIRPQEDSLNNPIDMVVGTPGRVLQHIEEGNMVYGDIKYVVLDEADTMFDRGFGPDIRKFLGPLKNRASKPDGLSFQTILVTATMTKAVQKLIDEEFQGIVHLRTSTLHKKISSARHDFIKLSGSENKLEALLQVLEPSLAKGNRVMVFCNTLDSSRAVDHFLGENQISAVNYHGEVPAEQRIELPRNRYIVTVERWKGDWTPLNSKLRRYVKVENLKKFKSDDDDCPTLVCTDLAARGLDLDVDHVVMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDLDLASKIEEAIRKNESLDAIRKESVRRSTARTQVTEQKEKTKKLVKVSNFKGKSSARTSSGNRSGMKYAKGSPVKSIKKGVYISKSGKSSSASSFSKGSSEKTQTSKMVNATKSTNSKLNVVGLGAKIHHQIIKNRVCEVDCGAHCTKYIVTGSRFCIRSDFSADNNILVFHGIDYR 664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste9g00940 664 MobiDBLite consensus disorder prediction 538 553 - -
Pste9g00940 664 SMART ultradead3 108 327 IPR014001 -
Pste9g00940 664 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 89 117 IPR014014 GO:0003724
Pste9g00940 664 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 47 509 - -
Pste9g00940 664 CDD SF2_C_DEAD 320 483 - -
Pste9g00940 664 Pfam DEAD/DEAH box helicase 113 296 IPR011545 GO:0003676|GO:0005524
Pste9g00940 664 MobiDBLite consensus disorder prediction 573 598 - -
Pste9g00940 664 Pfam Helicase conserved C-terminal domain 332 474 IPR001650 -
Pste9g00940 664 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 332 513 IPR001650 -
Pste9g00940 664 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 80 302 IPR027417 -
Pste9g00940 664 SMART helicmild6 361 474 IPR001650 -
Pste9g00940 664 CDD DEADc 100 299 - -
Pste9g00940 664 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 120 307 IPR014001 -
Pste9g00940 664 Gene3D - 53 308 IPR027417 -
Pste9g00940 664 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 239 489 IPR027417 -
Pste9g00940 664 MobiDBLite consensus disorder prediction 535 559 - -
Pste9g00940 664 Gene3D - 313 566 IPR027417 -
Pste9g00940 664 MobiDBLite consensus disorder prediction 62 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste9g00940 Pste-Chr9 5757454 5767049 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste9g00940 88 496 Eukaryotic Initiation Factors Gene Family AT3G19760 25.000 8.45e-36 137