Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste9g00939 TGTTGTTCGAAAGGGGTTAGGGTTTTAACCTTCAACTCGCCGCAGAGCGAAACAAAGCGAGCAATTCCTCCTTTCACTTTCGTCTCTGATATCTTGCGAAGCCCTTTCTTCTGCATAGCACTGTTAATTCTATAGTTTGTTCTGTAACGGATTGTGAGATGGGGACCAAGGCAAAGAAAAAAGCAATGAAGAATAATTTGAAAAAGGGTTCTTCTAATAAGTCAGCTGAGGGTCCTGATTTTTTGCCCTTGGAAGGTGGTCCTGCTCGAAAGCTTGCCGAACAGAAGCCTCTGGAGAACACTGCCACTGTTTTGTATGTAGGTCGGATTCCGCATGGATTTTATGAGAAGGAGATGGAAGGTTATTTTGGGCAATTTGGAACCATAAAGAGATTAAGAATTGCCAGGAATAAAAAGAGTGGAAAATCAAGGCATTTTGGGTTCATAGAATTTGAATCTCCTGAGGTAGCAAAAATTGTAGCTGATACAATGCACAATTATCTCCTTTTTGAGCACGTTCTCCAAGTTTATGTGATACCTCCAGAGCATGTTCATCCAAGATTATGGCGAGGATTCAATTACCGTTACAAGCCAGTAGATTCAGTCCAAATTGAACGGAAACGTCATGACAAGGATAGAACATTGGAAGAGCACCAGAAATTAGTGGAGAAGATTCTGAAACATGAACAAAAACGACATAAAAGAATAGAGGCTGCTGGCATTGATTATGAATGTCCTGAGATTGTGGGTAACATCCAGTCTGCTCCAAAGAAAATAAAGTTTGAAGACTGAGTGGCTAACCTGTCTCATCTTTCTTTCTAAGTGAGGTGGTTATGTTACCGTTCTTCCTTGGATGCTCCAAAGAAAATAAAGTTTGAAGGCTGCTGATCTACCATGTATCGAGGGTTCACAGGAGATACTGTTGTCTTAGGATTTTTAGTATTAGTAACTGCTTATTGTCGGCTTTTGCAATTTTGGGACTTAAAACCTTCTATTCTCAAAAATATTGACAGATGTACTATCCATTTTATATTTTCTTCAGCTTTTGAAGCAGTTGATTGCCTTCACTTTTTAAATTATATATCC 1085 0.3926 MGTKAKKKAMKNNLKKGSSNKSAEGPDFLPLEGGPARKLAEQKPLENTATVLYVGRIPHGFYEKEMEGYFGQFGTIKRLRIARNKKSGKSRHFGFIEFESPEVAKIVADTMHNYLLFEHVLQVYVIPPEHVHPRLWRGFNYRYKPVDSVQIERKRHDKDRTLEEHQKLVEKILKHEQKRHKRIEAAGIDYECPEIVGNIQSAPKKIKFED 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste9g00939 210 SUPERFAMILY RNA-binding domain, RBD 37 139 IPR035979 GO:0003676
Pste9g00939 210 PANTHER MKI67 FHA DOMAIN-INTERACTING NUCLEOLAR PHOSPHOPROTEIN 5 209 - -
Pste9g00939 210 Gene3D - 2 130 IPR012677 -
Pste9g00939 210 CDD RRM_NIFK_like 51 123 - -
Pste9g00939 210 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 52 121 IPR000504 GO:0003723
Pste9g00939 210 MobiDBLite consensus disorder prediction 1 34 - -
Pste9g00939 210 SMART rrm1_1 51 124 IPR000504 GO:0003723
Pste9g00939 210 Coils Coil 151 178 - -
Pste9g00939 210 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 50 128 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste9g00939 Pste-Chr9 5752221 5755275 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste9g00939 50 123 Eukaryotic Initiation Factors Gene Family AT1G71770 36.486 9.22e-08 50.1