Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste9g00935 CACGTTCATCAAAATTCAAAAGTTCCAACTTTGTTCACAGCTTCAGCCTCGGCAGCACCAAAACCCCAAACAAACCCTATTCCATCTTCTCATCATCTAAAGAACTCAAAAAAAAAAAAAAAAAAGAACATTTAGAAAAGAGAAGCCATGAGAAGAAGATGCAGAGAGCTTCTTAGCCTCTCTTTTTCTCTGCACTCACAGGTAAAGCTCAAGCCTTTAGCAAAATCTGCACCACCCATTTCACTATTTCAAAGTGGCATCACTTTCTCAACCTCTTCCTCCTCCACGACCCCTCCTATTGAAGAACCAAAGACTTCACCGCGGAATTCCCAAAGGGACTCACTGATTTTGGAACAGTTCAAGCAAAGGAAACTGAAAGGGTCTTCAAAAGATTCAAAGGGTACCCCACAGGTGTGTTCAACTTCAGTGCAATTAGGTTTAGATGCTGATGCTGAAAAGTTGGTTCAACAGGGTGTGCAAAATGAGAATGACCCCACCATGGTGGTTGGAGGTTTCAAGGAGTTAGGTGTGAGTGATGAGCTTGTTGAGGTCATGGAGGGGATTGGTGACTTTGTTCCTAGTGAGATACAGTGTGTGGCTATTCCTGCTATTTTGGAAGGGAAGAGTGTGTTGTTGAGTTCACCAGCTGAACATGACAGAACCTTGGCCTTCTTGTTGCCCCTTATTCAGCTGCTAAGACAGGACAGAGAGTTGCCTGGATCAAATCCAAAGCATCCGCAAGCCATCGTGCTTTGTGCTACAGAGGAGAAAGCTGCACAGTGCTTTAATGCTGCAAAACATATCATCGATAATGCAGAATTGAATTCTGTAAAGGATGGGACTTCACCAGATAAAGGGCAGGCACATGCCTCAATTGGCCTCATGATTGGAACTCCTTGTGAGATTCTTCAATACATTGAAGAGGGTAGTGTTGTTCCTTCTGAAATAAAATACTTGGTGTTGGATGAGGCAGATTTCATGCTTGGTAGTGGCCTTGGTCCTCAAATCCATAAAATTCTCAGACCATTACAAGACCATGAATCAAAATCGTCTGTCAAAAGATTACAAACTATTTTAACAATTTCAACCATAGCTGAGGTTTTGGGTGAACAATCCCCCATTGTAAAGCATCTTGAGAGCGATCATGAAGGAAACATTTCTGCAATGTCTCTGGAAATGGAACAGACAGAAGTCTTTCATTTCACAGAGTCTCTTCTTGCTCTTAGGAAAAAAGTGGCAGAGGCCATTGATTCCCTTTTGAAACAACAGTGACATCTTTGTCTACATTTTCTCTGACACTTAACAAAAGAAAAGTCAAAATAGGATTGTGATCTTTCTAATAACTTATAAGTTATAGCAACTGTTGAGTTGATTGTGTTTTTGTATATTATTATTATCATGTTCTTCTAACTCTAAAGCACCAAATATCAGGCTTTCTTCTTGTTAGTATTAGTATTTACAAAATCCTAGTTATTGAATACGTATATTGTACCTACT 1497 0.4021 MRRRCRELLSLSFSLHSQVKLKPLAKSAPPISLFQSGITFSTSSSSTTPPIEEPKTSPRNSQRDSLILEQFKQRKLKGSSKDSKGTPQVCSTSVQLGLDADAEKLVQQGVQNENDPTMVVGGFKELGVSDELVEVMEGIGDFVPSEIQCVAIPAILEGKSVLLSSPAEHDRTLAFLLPLIQLLRQDRELPGSNPKHPQAIVLCATEEKAAQCFNAAKHIIDNAELNSVKDGTSPDKGQAHASIGLMIGTPCEILQYIEEGSVVPSEIKYLVLDEADFMLGSGLGPQIHKILRPLQDHESKSSVKRLQTILTISTIAEVLGEQSPIVKHLESDHEGNISAMSLEMEQTEVFHFTESLLALRKKVAEAIDSLLKQQ 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste9g00935 374 SMART poly_2 311 373 IPR002004 GO:0003723
Pste9g00935 374 Pfam DEAD/DEAH box helicase 146 311 IPR011545 GO:0003676|GO:0005524
Pste9g00935 374 SMART ultradead3 140 338 IPR014001 -
Pste9g00935 374 MobiDBLite consensus disorder prediction 41 64 - -
Pste9g00935 374 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 152 333 IPR014001 -
Pste9g00935 374 Gene3D - 321 373 - -
Pste9g00935 374 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 56 317 - -
Pste9g00935 374 Gene3D - 97 320 IPR027417 -
Pste9g00935 374 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 259 374 IPR002004 GO:0003723
Pste9g00935 374 SUPERFAMILY PABC (PABP) domain 302 370 IPR036053 GO:0003723
Pste9g00935 374 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 113 316 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste9g00935 Pste-Chr9 5729932 5732843 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste9g00935 120 294 Eukaryotic Initiation Factors Gene Family AT3G19760 25.654 1.03e-09 57.8