Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste9g00933 GGCGCTTGTGTTCCCTGCCAAGGGAACCAAAAACCCAAAATTTATTAAAATAAAATAAAAAAAATCCCCAATTCCTTCTCGGATTAATTTTTTTGCAGAAAAATGGCGGCGGTGGCGAATTCTGCTTCTGCGGCGGCGGTTGTTCCGGCGCCGGCATTGAACGTTTCTCAGTTTGGCAATGCTTCTCTGTACGTTGGTGATCTCGAAGCCAACGTCAACGAAGGGCAATTGTTTGATCTGTTCAGTCAAGTGGCTCCGGTGATTTCAATTAGGGTTTGCAGAGATCAGACTAGGCGATCCTCTCTCGGTTACGCTTACGTCAACTTTTCCAACGGCCAAGATGCGGCTAATGCCATGGAACATCTGAACTACACTCCTGTGAATGGAAAACCCATTCGTATCATGTTCTCTCATCGAGATCCTAGCATTCGAAAAAGTGGACAAGGAAATGTCTTTATCAAGAACCTCGACATAACAATTGATAACAAGGCATTACATGACACCTTTGCTGCCTTTGGATATGTACTTTCCAGTAAGGTAGATGTTGACAGCAATGGTCAATCAAAGGGTTATGGATTCGTTCAGTTTGACAATGAAGAGTCTGCTCAGAATGCCATTAAAAAATTGAATGGCATGTTGATAAATGATAAAAAGGTTTACGTTGGACCTTTCATTCGACGCCAGGAAAGGTATCAAGCAAATGAATCACCGAAATTCACTAACGTGTATGTGAAAAACTTACCTGAAACATTTACTGATGAAGACCTTAAGCAGCTCTTTAGCACCTATGGTACAATAACAAGTGTTGTGGTCATGAAAGACGCAGATGGAAAGTCTAGGTGTTTTGGTTTTGTGAACTTTGAAAGTCCAGATTCAGCCACTGCCGCTGTTGAAAGGTTAAACGGTACTACCATCAATGATGATAAGGTTTTGTATGTAGGGAAGGCTCAGAGAAAAGCAGAAAGGGAGGCGGCCTTGAAAGCAAGGTTTGAACAAGAAAGAAAAAACAAATATGAAAAATTACAAGGTGCAAATCTGTATCTGAAGAATCTTGATGATAACGTCAATGATGAAAGATTGAAGGAGCTTTTCTCTGGTTTTGGTACAATAACATCTTGCAAGGTGATGATTGATTCACATGGGAATAGCAAGGGTTCTGGTTTTGTTGCCTTCTCTACTCTCGAGGATGCAACTAGAGCGTTGAATGAAATGAATGGAAAGATGATTGGACGGAAGCCTCTGTATGTTGCTGTGGCCCAGCGCAAGGAGGAGAGAAAGGCTCGTTTGCAGGCTCAGTTCTCTCAAATGCAAGTCTCAGCTTCAATTGCGATGGCACCTATACCAGCAGGAATCCCTGCATATCCTGGGGCACCAAGACTTGCCCATCAGCAACTGTATTATGGTCAAGGGACACCTGGTCTTGTACCACCTCAGCCAACAGGATATGGCTTCCAGCAGCAACTCTTGCCGGGCATGCGTCCCGCCATTGCTCCAAATTTCATCATGCCATACCATCTTCAGAGACAGGGTGCACCTGGGCAAAGGACTGGTACTCGAAGAGTTGGAAACCTTCCACAAGTGCAGCAGAACCAGATGCGTAGCAACCAAGGGTTTAGATACATGGGAAATGGTCGACTTGGCTTGGATTCTCAAGTACCAGTTGCCCCAGTGCCTTTGCCTTTTGATGCTTCAGTAATTTCTGCAGCTGCTGCAGCTTCTACTGATAATCAGCGTCCTGCCGCACTGTCTAACACACTTGCTTCAGCTTTGGCTTCTGCTACTCCAGAAAATCAGCGCGTGATGCTAGGTGAACATTTGTATCCACTGGTGAATCAACTTACGCCAAACAATCAGACAGCAAAGGTGACAGGAATGTTGCTGGAGATGGACCAGTCAGAGGTGATCCATTTGATTGAATCCCCTGAGGATTTGAAGACAAAGGTGTCTGAGGCAATGCAAGTTCTCCATGAAGCTGCATCTGGGTCTGAAGCTGGTGATCAGCTTAACTCATTGTCATTGAATGAATGACAACGTGGTATCATCATACATATTGGATTTCGAACCATTTTGGGACTCAATCGAGAACCTTCATTCTTTGGAGCGATACTCCATATTTATGAGGACCTTGGTACTCAGGTTTATTTATTTACTCAGATCATAGGTTACCTTTTAAAGATTTTTTGTGGATTTATCTTATATTTTATTTTTATATCAGATCATAGGTTACCTTTTAA 2234 0.4329 MAAVANSASAAAVVPAPALNVSQFGNASLYVGDLEANVNEGQLFDLFSQVAPVISIRVCRDQTRRSSLGYAYVNFSNGQDAANAMEHLNYTPVNGKPIRIMFSHRDPSIRKSGQGNVFIKNLDITIDNKALHDTFAAFGYVLSSKVDVDSNGQSKGYGFVQFDNEESAQNAIKKLNGMLINDKKVYVGPFIRRQERYQANESPKFTNVYVKNLPETFTDEDLKQLFSTYGTITSVVVMKDADGKSRCFGFVNFESPDSATAAVERLNGTTINDDKVLYVGKAQRKAEREAALKARFEQERKNKYEKLQGANLYLKNLDDNVNDERLKELFSGFGTITSCKVMIDSHGNSKGSGFVAFSTLEDATRALNEMNGKMIGRKPLYVAVAQRKEERKARLQAQFSQMQVSASIAMAPIPAGIPAYPGAPRLAHQQLYYGQGTPGLVPPQPTGYGFQQQLLPGMRPAIAPNFIMPYHLQRQGAPGQRTGTRRVGNLPQVQQNQMRSNQGFRYMGNGRLGLDSQVPVAPVPLPFDASVISAAAAASTDNQRPAALSNTLASALASATPENQRVMLGEHLYPLVNQLTPNNQTAKVTGMLLEMDQSEVIHLIESPEDLKTKVSEAMQVLHEAASGSEAGDQLNSLSLNE 641
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste9g00933 641 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 27 621 IPR006515 GO:0003723
Pste9g00933 641 SUPERFAMILY RNA-binding domain, RBD 27 194 IPR035979 GO:0003676
Pste9g00933 641 FunFam Polyadenylate-binding protein 543 627 - -
Pste9g00933 641 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 206 284 IPR000504 GO:0003723
Pste9g00933 641 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 310 387 IPR000504 GO:0003723
Pste9g00933 641 CDD RRM3_I_PABPs 205 285 - -
Pste9g00933 641 SMART rrm2_1 116 188 IPR003954 GO:0003676
Pste9g00933 641 SMART rrm2_1 311 383 IPR003954 GO:0003676
Pste9g00933 641 SMART rrm2_1 207 279 IPR003954 GO:0003676
Pste9g00933 641 SMART rrm2_1 28 101 IPR003954 GO:0003676
Pste9g00933 641 CDD RRM4_I_PABPs 309 387 - -
Pste9g00933 641 Gene3D - 22 116 IPR012677 -
Pste9g00933 641 FunFam Polyadenylate-binding protein 293 398 - -
Pste9g00933 641 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 27 105 IPR000504 GO:0003723
Pste9g00933 641 SUPERFAMILY RNA-binding domain, RBD 205 391 IPR035979 GO:0003676
Pste9g00933 641 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 115 187 IPR000504 GO:0003723
Pste9g00933 641 SUPERFAMILY PABC (PABP) domain 464 634 IPR036053 GO:0003723
Pste9g00933 641 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 548 626 IPR002004 GO:0003723
Pste9g00933 641 Gene3D - 293 396 IPR012677 -
Pste9g00933 641 Gene3D - 191 292 IPR012677 -
Pste9g00933 641 Pfam Poly-adenylate binding protein, unique domain 556 621 IPR002004 GO:0003723
Pste9g00933 641 SMART poly_2 560 624 IPR002004 GO:0003723
Pste9g00933 641 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 312 380 IPR000504 GO:0003723
Pste9g00933 641 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 117 185 IPR000504 GO:0003723
Pste9g00933 641 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 29 99 IPR000504 GO:0003723
Pste9g00933 641 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 208 275 IPR000504 GO:0003723
Pste9g00933 641 CDD RRM2_I_PABPs 113 189 IPR045305 -
Pste9g00933 641 Gene3D - 117 188 IPR012677 -
Pste9g00933 641 Gene3D - 546 626 - -
Pste9g00933 641 Coils Coil 385 405 - -
Pste9g00933 641 FunFam Polyadenylate-binding protein 113 196 - -
Pste9g00933 641 FunFam Polyadenylate-binding protein 20 112 - -
Pste9g00933 641 CDD RRM1_I_PABPs 28 107 IPR034364 -
Pste9g00933 641 PANTHER RNA BINDING PROTEIN 27 90 - -
Pste9g00933 641 SMART rrm1_1 311 383 IPR000504 GO:0003723
Pste9g00933 641 SMART rrm1_1 207 280 IPR000504 GO:0003723
Pste9g00933 641 SMART rrm1_1 116 188 IPR000504 GO:0003723
Pste9g00933 641 SMART rrm1_1 28 101 IPR000504 GO:0003723
Pste9g00933 641 FunFam Polyadenylate-binding protein 197 292 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste9g00933 Pste-Chr9 5706387 5710591 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste9g00933 26 625 Eukaryotic Initiation Factors Gene Family AT1G71770 57.749 0.0 682