Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste9g00891 GGTCATAATTGTGGGGTTGACCAAAGCTATGATGGTGCTGCTACTGTGTTCAGCACAACATATGCTTACAGTGAATGCCCTATATAAACATTTCTTTGAAAACCCTTCTTCTCTTTCACATGTCCTCTCTCTGTATCTTGATACCGAATTTATAATGGATTCAAATGGGAGCCTAAGGGCTAGTCCCTGGGCTAGGTCGCCATCCTTAAGCTCTTCTGCAAGTGGTTTATCCTCAGATCCTCTTTCTTTCCAAGGTTTTGGTTTGCAGCATAATCAGCATAAATGGGACGATCCCTCAAATTCAGATTATGGAATCAGTGCAGAAGTGCCTTTCAAAGAATTCAACCAACCTTCCCAAACCCAGTCCCCGCTTCCTTGCAATTCAAACAATGAGATTGAAATCCCTGATCAAGAAAACTGTCATATGAGTGAATCATCACAAACCAGTGCACTCCAAGATTGGGACCCCAGTGTGATGTTGAATAACTTGTCCTTCTTGGAAGAAAAGATTCATCAGCTCCAGGATCTAGTGCATTTGATTGCTCGTAGTCTTCTTCCTTCTGTTAGGCATAACCTTGTAAACACTAGTTCATTGGTTGGACAGATTGACCAGCTTCGCGGGACCACCATTCCTTCTGGGACTGGTGCAAGTAGCAGCTGTATTCAACAGCAGAATAATGGTGGGAAAAAAGTGTCTGATCAGTCCATGCAGACTGATATACCTAATAATTTTGAAATGGAGCAAAACCACAATGTAGGGGAACAAGAATTCAAAGATGAAGAAGATGCAGATGATGGAGAAAACCTTGCCCCTGGTTCATATGAGATTTTGCAATTAGAGAAAGAAGAAATCCTTGCACCTCATACCCATTTCTGTACAATTTGTGGGAAGGGGTTCAAGAGAGATGCAAATCTTCGAATGCACATGCGAGGCCATGGTGATGAGTACAAGACCCCAGCAGCGCTTGCAAAACCGCACAAAGAATCTGGGTCTCCAAAGCTTATCAAGAGGTATTCCTGCCCATATCCTGGCTGCAAGCGCAACAAGGAACACAAGAAGTTTCAACCTCTGAAGACTATCCTATGTGTCAAAAACCATTACAAAAGGACTCATTGTGATAAGAGTTACACTTGCAGTAGATGCAACACCAAGAAGTTTTCAGTCATGGCTGATCTGAAAACTCATGAAAAGCACTGTGGTAAGGATAAGTGGCTTTGTTCATGTGGCACAACATTTTCTAGGAAAGACAAGCTTTTTGGGCACATTGCTCTTTTCCAAGGGCATACACCAGCCATTCCCTTGGATGACACTAAAGGGGTAGCTGAACCACCCATTCATGACAGCAAAGAGAACAGCAACAAGGCACAGAGTGTGAACTTCACTTTTGGATCACCAAATCCTTCAAATGAAGTTCAAAATGTCATGGATGTGAAAGGCAACAGTGATGATCCTATCAGTTATTTCTCATCACTGAACTTTGAAGCCAACTTTGGTGCATATAATGAGTTCACAAGGCCTCTATTTGATGATTCTGAAGGTTCATTCTCTTTTGTCATGCCTGGATCATTTAAATCTGGAGGAGAACCAAATTTTCTTCAAGATTTTATCTTTTATCAAAACCTGTGGTCAGAGAAATATCAATTGGGCGATAGCATACCACTGGCTAAACAGCATTTTGGTTCCTTCACATTTACACTATGCTGTTCTTCACATATACTTGAATTTTTTAATAAACAGCTTATAGATAGAGGTATCAGGGTAAAAGAAGAAGAAGCTAGTAATTTGGCCCAGCCCAACAACAAAGACAGTACCATTTCTCAAACAGAAAATTGTTTTACAGGCTCTCGTCCCTGGAGCTCTGTTGATACTGCAAAATGGCATAATCATTGCCTTCCAACACCACCACTACCTCTAATCCTGAAACCGTTCTTATTGACCCAACCCGTTGTTCGTTGCAGTCTCCCCTGCTCTCATCGGTCCAAATTTCCATTCCTGGTCAAGTTCCTTTGTATGGCTATGATTTCTAAAAACAAGATGGCCTTTCTCATTGGCACTGTACCTGTCCCTACTGCCACTGATCCTTCCTTCCCTTCTTGGGAACGTTGCAATACTTTGATCATGTCCGTGATATACTTCGATCGTGCCATAGACATCTGGACGAATTTGAAAGAGCGTGTCTCTCAGAGTGATTTGCTGCGCATAGTAGAATTACAGAAAGAAGTCTATGGCCTTAAAAAAGGCCAATGCTCTGTTATTGATTATTTCACCAATCTCCGAGCTGTCTGGGAAGAACTCGATAATTTCAGGCCTCTCACTCCTTGCAATTGTCTTGCTCGCTCTTACCATCAA 2350 0.4204 MMVLLLCSAQHMLTVNALYKHFFENPSSLSHVLSLYLDTEFIMDSNGSLRASPWARSPSLSSSASGLSSDPLSFQGFGLQHNQHKWDDPSNSDYGISAEVPFKEFNQPSQTQSPLPCNSNNEIEIPDQENCHMSESSQTSALQDWDPSVMLNNLSFLEEKIHQLQDLVHLIARSLLPSVRHNLVNTSSLVGQIDQLRGTTIPSGTGASSSCIQQQNNGGKKVSDQSMQTDIPNNFEMEQNHNVGEQEFKDEEDADDGENLAPGSYEILQLEKEEILAPHTHFCTICGKGFKRDANLRMHMRGHGDEYKTPAALAKPHKESGSPKLIKRYSCPYPGCKRNKEHKKFQPLKTILCVKNHYKRTHCDKSYTCSRCNTKKFSVMADLKTHEKHCGKDKWLCSCGTTFSRKDKLFGHIALFQGHTPAIPLDDTKGVAEPPIHDSKENSNKAQSVNFTFGSPNPSNEVQNVMDVKGNSDDPISYFSSLNFEANFGAYNEFTRPLFDDSEGSFSFVMPGSFKSGGEPNFLQDFIFYQNLWSEKYQLGDSIPLAKQHFGSFTFTLCCSSHILEFFNKQLIDRGIRVKEEEASNLAQPNNKDSTISQTENCFTGSRPWSSVDTAKWHNHCLPTPPLPLILKPFLLTQPVVRCSLPCSHRSKFPFLVKFLCMAMISKNKMAFLIGTVPVPTATDPSFPSWERCNTLIMSVIYFDRAIDIWTNLKERVSQSDLLRIVELQKEVYGLKKGQCSVIDYFTNLRAVWEELDNFRPLTPCNCLARSYHQ 774
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste9g00891 774 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 130 500 IPR044300 GO:0010044|GO:0010447
Pste9g00891 774 MobiDBLite consensus disorder prediction 204 225 - -
Pste9g00891 774 ProSiteProfiles Zinc finger C2H2 type domain profile. 281 308 IPR013087 -
Pste9g00891 774 Gene3D Classic Zinc Finger 265 330 - -
Pste9g00891 774 SUPERFAMILY beta-beta-alpha zinc fingers 279 306 IPR036236 -
Pste9g00891 774 ProSitePatterns Zinc finger C2H2 type domain signature. 283 303 IPR013087 -
Pste9g00891 774 SMART c2h2final6 329 362 IPR013087 -
Pste9g00891 774 SMART c2h2final6 367 389 IPR013087 -
Pste9g00891 774 SMART c2h2final6 281 303 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste9g00891 Pste-Chr9 4944392 4948328 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste9g00891 248 510 C2H2 Transcription Factor Family AT1G34370 71.691 5.42e-128 381
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pste9g00891 None None None