Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste9g00887 ATGGGCAGGGATGAGTATATCCCCACATCTTTCCTTAGTGTTTTGTTCTTCTTTTGTTTCTGTCCTATGGTGTTGTCTCTGCTATTCCAAAACCAAACACAAACCATGAACAACATCTCAATGCAACTTTCTCCTCCTGTTCCATGGAATGCCTCAGAGCCATGTGCATGGAAAGGTGTGATTTGTGACAATACCAATTCCTCTGTAGTAGGCATTTCTTTATCTGGGTCTAAACTCCTGTCTTTTGAGTTTCTGCCTCTTGTATGCAAAATTCAAACTTTGGAGTATCTTGATGTCTCCAACAACCGTATGAGCTCAGTCCCAGATGCTTTCATCAGTGAGTGTGGAAAGATAAAGGGGTTGAAAATGCTGAATTTCAGTGGAAACAAGTTGGGAGATTCTTTACCAAATTTTCTAGGTTTTGATGCATTGGAATCCCTGGATATGTCTCTCAATATGTTGGAAGGGAGTATTGGTTTAGAGTTAGATGGGTTGGTTAGCCTCAAAATATTGAATCTTAGTAGTAACGTCTTTCGTGGTCCTATTCCTAACAGTAGTTTTGGTAGTTTGACTAGCCTGGAAGTCTTGGATCTCTCAAATAACTTATTTTCTGGTCCAATTCCTGATGATCTAACTAGAATGTCAGCTTTGACTCAGTTGATACTTTCTAACAATTTTCTGTCTGGTGCAATCCCAAAATTCACTAAAAATGTCCATGTTGACTATTCTGGAATGAATTATCTGAAAAATACTACTGCACAAGACAACCCAATAGCTCAGAGTGGCTCTAAAAAGGTAATGTCTGTTCATCTGCGAATTCTCGTTGCAATTATGGCATCTAGTTTTCTTGTTGGCATTGTCCTTCAGCTGGTTGTCTCCAGAAAAAATCACCACCAACCTAAAGTCATCCTAAGTAATTTATTAACAACTAATGCAATGCACAAATCAAGCATTCGTTTCTCCAAAGTCATGGAAGTTGTTTCTGATGCATCAAATGTTACTTTGAAAACAAGGTTTTCAACTTATTATAAGGCTATCATGCCATCTGGATCAATCTATTTTATCAAGAAACTTAACTGCTCAAACAAGATATTGTCAGTAGGAAGTCATGATAAATTTGGCAAAGAACTAGAAGTCTTGGCAAACTTGAAAAATTCTAACATCATGACTCCTTTGGCCTATTTTCTGTCAATTGATACTGCCTATATACTATATGAATATATCTCAAATGGCTCCCTCTATGATGTTCTTCATGGAAGCATGTTAGATTGGAGTAGCAGATATAGTATAGCTGTTGGGGTGGCTAAAGCACTTTCTTTTCTTCACGGATTTTCGTCCAGTCCAATACTACTCCTTGACCTATCAAGTAAAAGTATTATGTTGAAGTCCCTCATGGAGCTTCTAGTTGGGGATATTGAACACTACCGTGTAATTAATCTCTCAAAGAGCACAGGGAATTTTTCTGAAGTTGTTGGTTCTATTGGTTATACTCCTCCAGAGTATGCATACACAATGACAGTAACAATGGCAGGGAATGTCTACAGTTTTGGTGTCATTCTGCTTGAACTGCTCACAGGAGAACCTCCGGTGACTGAGGGAATTGAATTGGTCAAGTGGGTCTTGGATAATTCAACAAAACCACAACACATTCTTGATTTCAATCTCAGTAGATCATCAAGAGAAATCAGAAGCAAGATGCTTGCAATTCTAAAGATTTCTCTTTTATGTGTTAGTACAGACCCACAAGCAAGACCAAATATGAACAGTGTGCTACATATGCTTCTAATTGCTGCATGA 1797 0.3812 MGRDEYIPTSFLSVLFFFCFCPMVLSLLFQNQTQTMNNISMQLSPPVPWNASEPCAWKGVICDNTNSSVVGISLSGSKLLSFEFLPLVCKIQTLEYLDVSNNRMSSVPDAFISECGKIKGLKMLNFSGNKLGDSLPNFLGFDALESLDMSLNMLEGSIGLELDGLVSLKILNLSSNVFRGPIPNSSFGSLTSLEVLDLSNNLFSGPIPDDLTRMSALTQLILSNNFLSGAIPKFTKNVHVDYSGMNYLKNTTAQDNPIAQSGSKKVMSVHLRILVAIMASSFLVGIVLQLVVSRKNHHQPKVILSNLLTTNAMHKSSIRFSKVMEVVSDASNVTLKTRFSTYYKAIMPSGSIYFIKKLNCSNKILSVGSHDKFGKELEVLANLKNSNIMTPLAYFLSIDTAYILYEYISNGSLYDVLHGSMLDWSSRYSIAVGVAKALSFLHGFSSSPILLLDLSSKSIMLKSLMELLVGDIEHYRVINLSKSTGNFSEVVGSIGYTPPEYAYTMTVTMAGNVYSFGVILLELLTGEPPVTEGIELVKWVLDNSTKPQHILDFNLSRSSREIRSKMLAILKISLLCVSTDPQARPNMNSVLHMLLIAA 598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste9g00887 598 SUPERFAMILY L domain-like 38 236 - -
Pste9g00887 598 Pfam Leucine rich repeat 182 225 IPR001611 GO:0005515
Pste9g00887 598 FunFam Leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 408 598 - -
Pste9g00887 598 Gene3D Ribonuclease Inhibitor 27 185 IPR032675 -
Pste9g00887 598 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 30 185 - -
Pste9g00887 598 SMART LRR_typ_2 190 214 IPR003591 -
Pste9g00887 598 SMART LRR_typ_2 165 189 IPR003591 -
Pste9g00887 598 SMART LRR_typ_2 91 113 IPR003591 -
Pste9g00887 598 Pfam Protein kinase domain 339 592 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pste9g00887 598 FunFam Leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 296 407 - -
Pste9g00887 598 Gene3D Phosphorylase Kinase; domain 1 293 407 - -
Pste9g00887 598 PRINTS Leucine-rich repeat signature 94 107 - -
Pste9g00887 598 PRINTS Leucine-rich repeat signature 190 203 - -
Pste9g00887 598 Gene3D Transferase(Phosphotransferase) domain 1 408 596 - -
Pste9g00887 598 ProSiteProfiles Protein kinase domain profile. 320 595 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pste9g00887 598 Gene3D Ribonuclease Inhibitor 186 251 IPR032675 -
Pste9g00887 598 SUPERFAMILY Protein kinase-like (PK-like) 338 595 IPR011009 -
Pste9g00887 598 PANTHER LEUCINE RICH REPEAT KINASE 2 79 595 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste9g00887 Pste-Chr9 4905243 4908579 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste9g00887 94 594 Receptor kinase-like Gene Family AT2G41820 35.229 2.63e-76 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Pste9g00887 Pkinase 3.7e-24 CL0016