Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste9g00881 ATGATTGGAAACTTCATCGACGACATTGATTGTGGCAGCTTCTTCGACCACATCGACGACCTCCTCGAATTCCCCTCCGACGACACCGACACCGCCACCGCCGGGAACTTCTGGTCCGCCGACTCCAACTCGCTTCCCGCCACCGACACGGTGTTTCCCGGCGGCGCCGTGCCGGACCTCTCCGTTCCGTATGATGACATTGTCCAATTGGAATGGCTATCCAATTTTGTTGAGGACTCTTTCTCTGGTGGGAGCCTCACCATGAAGAAAGAGGAGCCACAATGCATCACCAAGGGGGACATAGCTCATGCCCAATTCCATACATCAAGCCCAGTCTCAGTTCTGGAGAGCAGCAGCTTCTCCTCTGGGGAGAAGGCTGCACCTTCTAGCACGGAGATTTACATCCCCGTGCCATGTGGGCGCGCGCGCAGCAAGCGCCAGCGCCCTGCAGCCTTCAATCCCCACCCTGTGATGCAGCTCATCTCGCCAGCGTCCTCCACCGGCGAGAACACGCACCACAAGGCGGCCTCATTGGATTCAGACAATTTCGCCGAGTCTGTGATGGTGAAGGCACCAAAGCAGGCCTCTGGGGAGCATAACAAGAAGAAAAAGAAGATCAAGGTGACATTCTCATCAGGCCAGGACAAAGACAACACAGTTAGGAAATGTTTGCACTGTGAGATCACTAAGACACCACAGTGGAGGGCAGGGCCAATGGGGCCAAAAACACTCTGCAATGCCTGTGGTGTGCGCTACAAGTCAGGCCGGCTCTTCCCGGAATACCGCCCTGCCGCCAGTCCAACCTTCTGCGCCGCCGTGCACTCCAACTCCCACAAGAAGGTCCTTGAAATGAGGAACAAGACAGTTACCAAATCTGCCTTTGCAACAACTGATTCTGCTGAGCTCATTCCAAACACTAACAACAGCCTTTCCCTTGAATACATGTGA 948 0.5496 MIGNFIDDIDCGSFFDHIDDLLEFPSDDTDTATAGNFWSADSNSLPATDTVFPGGAVPDLSVPYDDIVQLEWLSNFVEDSFSGGSLTMKKEEPQCITKGDIAHAQFHTSSPVSVLESSSFSSGEKAAPSSTEIYIPVPCGRARSKRQRPAAFNPHPVMQLISPASSTGENTHHKAASLDSDNFAESVMVKAPKQASGEHNKKKKKIKVTFSSGQDKDNTVRKCLHCEITKTPQWRAGPMGPKTLCNACGVRYKSGRLFPEYRPAASPTFCAAVHSNSHKKVLEMRNKTVTKSAFATTDSAELIPNTNNSLSLEYM 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste9g00881 315 ProSiteProfiles GATA-type zinc finger domain profile. 217 253 IPR000679 GO:0006355|GO:0043565
Pste9g00881 315 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 221 280 - -
Pste9g00881 315 SMART GATA_3 217 267 IPR000679 GO:0006355|GO:0043565
Pste9g00881 315 PIRSF Txn_fac_GATA_plant 2 311 IPR016679 GO:0003677|GO:0005634|GO:0045893
Pste9g00881 315 FunFam GATA transcription factor 214 299 - -
Pste9g00881 315 Pfam GATA zinc finger 223 256 IPR000679 GO:0006355|GO:0043565
Pste9g00881 315 CDD ZnF_GATA 222 269 IPR000679 GO:0006355|GO:0043565
Pste9g00881 315 MobiDBLite consensus disorder prediction 192 213 - -
Pste9g00881 315 Gene3D - 217 267 IPR013088 GO:0006355|GO:0008270
Pste9g00881 315 ProSitePatterns GATA-type zinc finger domain. 223 248 IPR000679 GO:0006355|GO:0043565
Pste9g00881 315 PANTHER GATA TRANSCRIPTION FACTOR 15 289 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste9g00881 Pste-Chr9 4811892 4816183 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste9g00881 18 287 C2C2-Gata Transcription Factor Family AT4G32890 36.879 3.24e-49 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Pste9g00881 GATA 9.4e-15 CL0167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste9g00881 9 4811892 4816183 Pste4g02035 4 14947555 14951395 PCT