Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste9g00872 AAATAAACCAAACCCCACCGTAAATATTAAAAGAAAACAATGATCCCTTGAAAGGAAGGGAAGTAGCTAGCCAACATTCTGCTGATTTAAGATAGGTTCATTCTAGGCAGAACAAAATGACAAACCAAACATAAAGAAACACAAAACATACAAATGAAGAATAGGGAGGTGGTGGTGTAGTAAAAGTGAGGTCAAGGCCGGTGAAAGAGAAAGCCAAACCAAAAAGTTTATTGCTATTATTAATTTGCTTTTGTTTTTCAGTGTCAAATTGCACTAATGAAACACTCTAACACACTCCATCAACACCATATATACGCCTTCTCTTCACACTATTTTCACACTAGTTAACGCACATCAGGACAGACCTTCTTTCTTTTTCTGAACCTTTCTTTCAGGTTCTTCTTTGCTTGATCATTGTGCTGTGTGAAACCAAAGGGTGGTTGCAAATTGCAATGGCTAAGCATGATGTTGAGGTTGCTGAACGTGGTTCCTTCTCTGCCAAGGACTACCATGATCCTCCTCCAGCACCTTTGGTTGATGCTGAGGAACTCACACAATGGTCCTTCTATAGGGCCTTGATTGCTGAGTTCATTGCCACACTGCTCTTTCTTTACATCACTGTGTTGACTGTGATTGGTTACAAGAGCCAGAGTGATGTGAAGGCTGGGGGTGATGTGTGTGGTGGTGTTGGCATTCTTGGCATTGCTTGGGCCTTTGGTGGCATGATCTTCATCCTTGTTTACTGCACTGCTGGAATCTCAGGGGGTCACATAAACCCAGCAGTGACATTTGGGCTGTTCTTGGCTCGCAAGGTGTCTTTGATTAGAGCTATAATGTACATGGTGGCTCAGTGTTTGGGAGCCATATGTGGAGTTGGGTTGGTTAAGGCCTTCCAAAAGGGTTACTACAATAAGTATGGTGGTGGGGCCAATGAGCTCAATGAGGGATACAGCACTGGTACTGGATTGGGTGCAGAGATTGTTGGAACCTTCGTTTTGGTGTACACTGTGTTCTCTGCAACTGACCCCAAGAGGAATGCTAGAGATTCTCATGTGCCGGTTTTGGCTCCACTTCCAATTGGCTTTGCTGTGTTCATGGTTCACTTGGCAACCATCCCAGTAACTGGCACTGGCATTAACCCTGCTAGGAGTCTAGGAGCTGCTGTCATATTCAACCAAAAAAAGGCCTGGGATGACCATTGGATCTTTTGGGTTGGACCATTTATTGGAGCAGCTATTGCAGCCTTCTATCACCAATTCATCTTGAGAGCAGGTGCTGTTAAGGCTCTTGGTTCATTCAGGAGCAACCCCACCATTTGAGCCAATTTCCTCTTCATGAAAGAATTTCATTGGAAGCAAAATGAGTTGACATTGCAAGAATAATAATAATAATAATGGCAAGCTCTTGTGCTTTCATTGCAAGCTTTTCTTTAATCCTATGTAGATTGAAGGTTCTTTCAAAACAATAGACACCCTTTAGACTTTAGTATTTCATGCACTTTCCTTTGGTAAATACCCTTTAGTACTATCTCTTAGCACTTTATTCCCTTCAGTGTGTGAACTATTCTTCTAGGTAAATTAATGAATCTCATGTACGCAACTTATTGATGGGAAAAAAAAGTTATATCATATCCATGCTTTTTACTCAAA 1649 0.4178 MAKHDVEVAERGSFSAKDYHDPPPAPLVDAEELTQWSFYRALIAEFIATLLFLYITVLTVIGYKSQSDVKAGGDVCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLIRAIMYMVAQCLGAICGVGLVKAFQKGYYNKYGGGANELNEGYSTGTGLGAEIVGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSLGAAVIFNQKKAWDDHWIFWVGPFIGAAIAAFYHQFILRAGAVKALGSFRSNPTI 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste9g00872 288 ProSitePatterns MIP family signature. 106 114 IPR022357 -
Pste9g00872 288 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 9 277 IPR034294 -
Pste9g00872 288 Pfam Major intrinsic protein 32 267 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pste9g00872 288 NCBIfam MIP family channel protein 44 267 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pste9g00872 288 Gene3D Glycerol uptake facilitator protein. 25 288 IPR023271 -
Pste9g00872 288 CDD MIP 40 270 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pste9g00872 288 FunFam Probable aquaporin PIP1-2 25 286 - -
Pste9g00872 288 PRINTS Major intrinsic protein family signature 210 232 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pste9g00872 288 PRINTS Major intrinsic protein family signature 250 270 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pste9g00872 288 PRINTS Major intrinsic protein family signature 174 192 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pste9g00872 288 PRINTS Major intrinsic protein family signature 40 59 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pste9g00872 288 PRINTS Major intrinsic protein family signature 88 112 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pste9g00872 288 PRINTS Major intrinsic protein family signature 125 144 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pste9g00872 288 SUPERFAMILY Aquaporin-like 32 272 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste9g00872 Pste-Chr9 4684775 4689129 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste9g00872 1 284 Major Intrinsic Protein MIP AT2G37170 83.803 7.44e-177 489