Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste9g00863 ATGGAAATTCAATTCCAGCGTCCAAAGCTTAAGCAGCAGTTAAGAGGCAAATTGAAAGGGAGAAGCAACAACAAAAGTTACAAATTCAAGAACAAGTATATTGGGGTGAGGCAAAGAGCATCAGGGAAATGGGTTGCTGAGATCAAAGACACAACACAGAAGATAAGAATGTGGCTTGGCACATATGACACAGCAGAGGATGCTGCAAGGGCTTATGATGAAGCTGCATGCCTCCTTCGTGGATCCAACACGCGCACCAACTTCACCACACGTGTGTCCTTGGATTCCCCTCTTGCTTCAAGGATTCAGAATCTTCTCAACAATAGAAAAGGTTCCAAACAAGAAGAACATCATGTGGAACCATGTGCTACAAGGGTTAAGAACAAGCAACAAGATGAAATAACAACCCAAAACACACAACTATTTGATGATGATGCTTATAGACCTGATTTGAGCAATTTCATGGGGTCTGAGTCAGGTTCTCAGAACAATCCTTCATGGGGTTTTGAAGCTGTTTTAGATCGTTTGCCCTTTGGCCAAGTAATGGAAATAGCAAACCTAACTGATATAGCTGGCTCGGAGCTTCCAGATTTTGAAAGAATGAAGGTTGAAAGACAAATATCAGCTTCACTTTATGCAATTAATGGTGTGCAAGAGTACATGAACACTGTTCAAGACTCTAATGATGGAGCTATCTGGGATCTTCCACCTATGTGCTCATTTTTGTGTTAA 732 0.4153 MEIQFQRPKLKQQLRGKLKGRSNNKSYKFKNKYIGVRQRASGKWVAEIKDTTQKIRMWLGTYDTAEDAARAYDEAACLLRGSNTRTNFTTRVSLDSPLASRIQNLLNNRKGSKQEEHHVEPCATRVKNKQQDEITTQNTQLFDDDAYRPDLSNFMGSESGSQNNPSWGFEAVLDRLPFGQVMEIANLTDIAGSELPDFERMKVERQISASLYAINGVQEYMNTVQDSNDGAIWDLPPMCSFLC 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste9g00863 243 Gene3D AP2/ERF domain 31 92 IPR036955 GO:0003700|GO:0006355
Pste9g00863 243 SMART rav1_2 32 95 IPR001471 GO:0003700|GO:0006355
Pste9g00863 243 SUPERFAMILY DNA-binding domain 32 90 IPR016177 GO:0003677
Pste9g00863 243 ProSiteProfiles AP2/ERF domain profile. 32 89 IPR001471 GO:0003700|GO:0006355
Pste9g00863 243 Pfam AP2 domain 32 81 IPR001471 GO:0003700|GO:0006355
Pste9g00863 243 PRINTS Ethylene responsive element binding protein signature 33 44 IPR001471 GO:0003700|GO:0006355
Pste9g00863 243 PRINTS Ethylene responsive element binding protein signature 55 71 IPR001471 GO:0003700|GO:0006355
Pste9g00863 243 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 26 207 - -
Pste9g00863 243 CDD AP2 32 88 IPR001471 GO:0003700|GO:0006355
Pste9g00863 243 FunFam ethylene-responsive transcription factor RAP2-11 31 90 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste9g00863 Pste-Chr9 4585585 4586553 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste9g00863 19 243 AP2-EREBP Transcription Factor Family AT5G19790 41.463 8.88e-45 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pste9g00863 AP2 1.6e-13 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste5g01862 5 11761361 11762200 Pste9g00863 9 4585585 4586553 PCT