Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste9g00813 CAATCTCAACCTATAGCTACTATGCCTATTTCCTTCTCTTAATTTCTCTCACTTTCTTTGAACTTTCCTCTTTCTTTCTTGTAACATAATACACACACATATATATAACTTAAGCCACATCAAACACATATACATACACATATATTGTATCTATCTAGTTCTTGAAGAACAAGTTATTGGTTTGTTTGTTGTTGCTTAAGGTTTGGTTTGATGATGGAAGAGCCTGTTGTGGTTAACAAAGGTGATGACGTTTTGGATTTGCCTCCAGGGTTCAGGTTCCACCCCACAGATGAAGAGATCATCACTTGTTATCTCACAGAAAAGGTGCTGAATAGAGACTTCAGTGCAACTGCTATGGGGGAAGCTGATTTGAACAAGTGTGAGCCTTGGGACTTGCCTAAGAAAGCAAAGATGGGGGAGAAAGATTGGTACTTCTTTTGCCAAAGGGATAGGAAGTATCCTACAGGCATGAGAACCAATAGAGCAACTCAATCTGGGTATTGGAAGGCCACTGGAAAAGACAAAGAGATTTACAAAGGGAAGAACAATCTTGTGGGGATGAAGAAGACCCTTGTTTTCTATAGAGGAAGAGCACCAAAAGGAGAGAAGACAAATTGGGTTATGCATGAATTCAGATTGGAAGGCAAATTCTCATGTTACAACCTTCCCAAAGCTGCAAAGGATGAATGGGTTGTGTGCAAGGTTTTCCACAAGAACATCACAGATGTTAACAAAAGGGTTCTCCCAATTAGCCCTGGCCTTTTAAGAATGAACTCAATTGGAGATGATCTATTTGATTTCTCTTCTCTCCCACCTCTTGTGGATCCTCTCTATGACCAAACCTCAAACAAGCACATTGACCATGATTTCAAGGGTGCTACTAATAATAGTACCAACACTCCTTCATCTTCATCATCTAAACCACCAATTGCATCAGGGTCCTATTATCTTCCCAACTTCATCAACAACAACAATAACAATCAAAACATGCTTATGCATATGATGAAGCCAGAAGAGGTCAGAAGCTATGAGATTCCCACCAATAATAGCAACTATGCTACCACCAGCCAAGGAAATTTCAACACCAATAACCCAATGGGAATTAGCACTCTTCAAAATTCAAGCTCACCCTTCAACATGTTCCAAGATTATTATAACAGCAAGAACAGTTTCAAATATGCCTCAGGGTTGGACAAAGAGTGCAAGGTGGAACAATTCTCCAACACTAGGAACCAGCCTGTGGTCAGTGCCTCTCAAGACACGTGCCTCAGCAATGACAGAAACACTGACACTTCCTCAGTTGTTTCAAAGCAAGACAACAACATGGGAAGGAACAAGGCATTGTACGAGGATCTTGAAGGCCCTTCATCAGTTGCTACCCTCTCAGATTTGGAATGCCTGTGGGATGATTACTGAAGAACAATTACAATTTACAAGACGTTATGGAGACTCAAGAGAGAAATTAAAACAAGTTTGTTGATTTATGTTTTTTATTATCATTACTACGTACCATATATTTTCTTATTAATAATTAGACAGTTATATAAACAGATATATGTCATATATATAAATTAGGCATGAAAAAAGTTCTGGGGTACACAAATACTGTATAGATTTATGATTTGATTAGATTATCCGGTCTTGTTAAAGTTAGGTTTTTTATTTCATAGATCAAGGAGAAGGATTTGATCATGCTCATGTACATTTTTCTTTTGTTATGTATTAGTGG 1729 0.3823 MMEEPVVVNKGDDVLDLPPGFRFHPTDEEIITCYLTEKVLNRDFSATAMGEADLNKCEPWDLPKKAKMGEKDWYFFCQRDRKYPTGMRTNRATQSGYWKATGKDKEIYKGKNNLVGMKKTLVFYRGRAPKGEKTNWVMHEFRLEGKFSCYNLPKAAKDEWVVCKVFHKNITDVNKRVLPISPGLLRMNSIGDDLFDFSSLPPLVDPLYDQTSNKHIDHDFKGATNNSTNTPSSSSSKPPIASGSYYLPNFINNNNNNQNMLMHMMKPEEVRSYEIPTNNSNYATTSQGNFNTNNPMGISTLQNSSSPFNMFQDYYNSKNSFKYASGLDKECKVEQFSNTRNQPVVSASQDTCLSNDRNTDTSSVVSKQDNNMGRNKALYEDLEGPSSVATLSDLECLWDDY 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste9g00813 401 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 16 291 - -
Pste9g00813 401 ProSiteProfiles NAC domain profile. 17 168 IPR003441 GO:0003677|GO:0006355
Pste9g00813 401 Pfam No apical meristem (NAM) protein 18 143 IPR003441 GO:0003677|GO:0006355
Pste9g00813 401 MobiDBLite consensus disorder prediction 215 239 - -
Pste9g00813 401 FunFam NAC domain-containing protein 100-like 26 172 - -
Pste9g00813 401 MobiDBLite consensus disorder prediction 347 368 - -
Pste9g00813 401 Gene3D NAC domain 26 171 IPR036093 GO:0003677|GO:0006355
Pste9g00813 401 SUPERFAMILY NAC domain 13 169 IPR036093 GO:0003677|GO:0006355
Pste9g00813 401 MobiDBLite consensus disorder prediction 222 239 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste9g00813 Pste-Chr9 4235468 4237716 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste9g00813 1 399 NAC Transcription Factor Family AT5G18270 48.276 2.56e-116 340
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pste9g00813 NAM 3.1e-39 No_clan