Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste9g00796 AGAATGACAATTTACAAGGTGCAGGGAACAAGATGTCGCAGGTTCACTCCATTACAACGTTCAAGCATCTCTCACTACCAACTCACTCTTTTGTTGCTCCCAAAAAGTTCATTATCCCTTTCAATTGCAAATTTTCCTTCACACTCCCATCATCACTCTCTGTCAAATGCTACCACTCTAATCTAGTTCAACCGAGACCCTTCCCACCACCGCCACAACCACTAGAAATGCCAGAGCAAAACGTGTACGTGGGTTACTCTGTTTACACGAGGAAGGGTGTGCTAACCGTGACTCCTAGAGCTCCAGAATTTGAATCCAGAAATTCTGGGGCGTTCAAAGTGTCTAAGGATGGTTTTGTGTTGCTCCAGTTTGCTCCTTCAATATTCTCACTATCGTTGAGTGAAATGGGAACTCTAATTAGCCTTGGTGCAAAGGACTCTTGGGAATTTTTTCACGAGACAATTAAGTCAAAAAGCAATGAAATTGAAGTCAGAAAAACTTTGAAGGTGGAGCCACTTCTGGATGCTACTGGTCACATATTTAAATTAAGCGTTCAAAAAAGGACTCCAGACATGGAGGAAATTCAGAAAAGCATCTCTCTCCCAGTTGTTAGTTCAGAGCTAGCGGTTTTAAGATCAATTTTCAATGAGCAATGTAGTGTTTAATAGAATAGAGATCAAGATTAATGAATTGGAAAATATGATCATTTACATGACAAATGTTGGATTAAAACTCTATTTGAAAGAAAAAATTATTCTTCTATTAATGTTAATGTAAACCATTTTTATAAATGTCTACTATATGAGCCGACAGATATATTGTAATATTTTAGTTGGTAACGAAGGAAGCACGATCAATGCATAATTTTGGAGTTTATTGACTTTAC 886 0.377 MSQVHSITTFKHLSLPTHSFVAPKKFIIPFNCKFSFTLPSSLSVKCYHSNLVQPRPFPPPPQPLEMPEQNVYVGYSVYTRKGVLTVTPRAPEFESRNSGAFKVSKDGFVLLQFAPSIFSLSLSEMGTLISLGAKDSWEFFHETIKSKSNEIEVRKTLKVEPLLDATGHIFKLSVQKRTPDMEEIQKSISLPVVSSELAVLRSIFNEQCSV 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste9g00796 210 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 65 205 IPR013742 GO:0003697|GO:0006355|GO:0006952
Pste9g00796 210 Gene3D Transcriptional Coactivator Pc4; Chain A 65 208 IPR009044 GO:0003677|GO:0006355
Pste9g00796 210 Pfam Whirly transcription factor 77 203 IPR013742 GO:0003697|GO:0006355|GO:0006952
Pste9g00796 210 SUPERFAMILY ssDNA-binding transcriptional regulator domain 70 205 IPR009044 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste9g00796 Pste-Chr9 4129591 4140620 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste9g00796 42 205 Whirly Transcription Factor Family AT1G14410 48.603 1.01e-47 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Whirly Pste9g00796 Whirly 3.6e-33 CL0609