Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste9g00793 TTCTAGACCACCGTCAATGCAACGCAACCTATACATTATTTAAGCATTTCAGGCGCAAACTTCAACGCAACCGCAACCGCAACCGCCACCGAACCATGGCAGAACCATCCACCGCCGCCACTCCGCCGCCTGCCACCAAAAGCTGGGCCGACGAGGCCGATGAGGAAACCAATTCTTCCGCCGCCGAGCCGGAAACCTCCTCCGTCAATCTCGGCGCGTTAACCATCGAAGACAACCAAAACCCTCCCAAACTCTTAGACGACCCCGACGATGCCAATATCCAAGCGGTTACGTCCGGCGACACGCCTTACACGTCGGCGGCGAGGTTCGAGGACCTGAACCTCTCGGCGGAGCTCTTGAAAGGTCTCTACGTTGAGATGAAGTTCGAGAAGCCGAGCAAGATCCAGGCGATAAGTCTGCCGATGATCCTGAGTCCGCCGCACAAGGATTTGATCGCGCAGGCGCACAACGGCTCCGGCAAGACGACGTGCTTCGTGCTCGGGATGCTCAGCCGCGTCGATCCGAAGGTGCAGGCGCCGCAGGCGCTCTGCATCTGCCCCACCCGAGAGCTTGCCCTTCAGAACACCGCCGTGCTCCGCAAGATGGGGAAGTACACCGGAATTGCGTCGGAGTGCGCCGTGCCCACCGACAAGGACGCCGTTCATGTCTCCAAGAGGGCCCCCATTATGGCGCAGGTGGTCATTGGGACACCGGGGACCATCAAGAAGTTCATTAGCTTCAAGAAGCTTGGGGCCTCCAGGTTGAAGATTCTTGTTTTCGATGAGGCTGATCAAATGCTTGCTGAGGTAATTGTGGTGTTGGGTACTTGTTATTTTGCTGAACTTGTTATTTTTGTGGTTCGTTTGGAGGATGGATTTCAAGATGATTCCCTGAGGATAATGAAGGAAATACAAAGAGTCAATCCTAGCTGTCAGTCAAGAATTTCGTTTCAAGGACAGTTCAAGAGGGATCATAATCAACTCTTTGTAAAGAAGGAAGAACTATCTTTAGATGCAGTGAAGCAATATAAAGTGCATTGTCCTGATGAACTTGCTAAGATTGAAGTAATAAAAGATTACATATTTGAAATAGGAGAGAATGTGGGGCAAACCATTATATTTGTGGCCACAAGAAATAGTGCAAAAATGTTGCATAAATCACTTGTTGATTTGGGCTATGAGGTTACATCTATACAAGGTGCTCTTAATCATGAAGAGAGAGACAAAATTGTCAAGGAGTTCAGAGATGGTTTGACTCAAGTCCTTATATCAACTGATCTTCTTGCTCGTGGCTTCGATCAGCAACAGGTTAATTTGGTCATCAATTATGATCTTCCAAAGAAACACAATCTACCTGAGCCCGACTATGAAGTATATTTGCACAGGGTTGGCAGAGCTGGGCGTTTTGGTCGCAAAGGGGCTGTATTTAACCTGATATGTACTGAAGAGGATGGAAGGCTCATGTCGAAGATTGAGAGCCATTTTGGCACTCATGTAGCTGAGGTGCGAGCACAAAGTGTTGAAGACTACAAAGCTGCTCTCAAGGAAGCCGGTTTATTGCAATGATGTAAATCTGTACAAGTTGAGGGATGTTGACGACTTTTCTGTTTCTCCTCAAGTTTGCCTTGATACCGGTTAAAGATTTTGGCCACATATCTATGAATGCTTTAATTATTCTACACGGACACCATGCATACGGATCATTGTTTAAGTTCTGGGGATGGAGAGTTCTTGTTCAGTCTGTGTTTTTAATGCTGCTGCCGTGGTTGATTACCTCTCATTATATTAGCTGTGTGTAATTTAGAACTTTTCTGTTCAACATTTTTGTTTAGACTAAAATCTCTGTTTATAATTTATATATAAACAGCTTGATGCATAAATGAGGTGTGTAAGCTTACCTAGATATCAAGGTATCACAACTTAATATATTATTATGATGTACAATTCATAAAAATAATCGACATCTTTTTGTTTTTTTTC 1979 0.4573 MAEPSTAATPPPATKSWADEADEETNSSAAEPETSSVNLGALTIEDNQNPPKLLDDPDDANIQAVTSGDTPYTSAARFEDLNLSAELLKGLYVEMKFEKPSKIQAISLPMILSPPHKDLIAQAHNGSGKTTCFVLGMLSRVDPKVQAPQALCICPTRELALQNTAVLRKMGKYTGIASECAVPTDKDAVHVSKRAPIMAQVVIGTPGTIKKFISFKKLGASRLKILVFDEADQMLAEVIVVLGTCYFAELVIFVVRLEDGFQDDSLRIMKEIQRVNPSCQSRISFQGQFKRDHNQLFVKKEELSLDAVKQYKVHCPDELAKIEVIKDYIFEIGENVGQTIIFVATRNSAKMLHKSLVDLGYEVTSIQGALNHEERDKIVKEFRDGLTQVLISTDLLARGFDQQQVNLVINYDLPKKHNLPEPDYEVYLHRVGRAGRFGRKGAVFNLICTEEDGRLMSKIESHFGTHVAEVRAQSVEDYKAALKEAGLLQ 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste9g00793 489 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 148 453 IPR027417 -
Pste9g00793 489 Pfam DEAD/DEAH box helicase 102 237 IPR011545 GO:0003676|GO:0005524
Pste9g00793 489 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 324 479 IPR001650 -
Pste9g00793 489 Pfam Helicase conserved C-terminal domain 321 438 IPR001650 -
Pste9g00793 489 SMART helicmild6 350 438 IPR001650 -
Pste9g00793 489 Gene3D - 305 482 IPR027417 -
Pste9g00793 489 SMART ultradead3 96 285 IPR014001 -
Pste9g00793 489 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 37 457 - -
Pste9g00793 489 CDD SF2_C_DEAD 308 447 - -
Pste9g00793 489 MobiDBLite consensus disorder prediction 28 45 - -
Pste9g00793 489 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 110 244 IPR014001 -
Pste9g00793 489 MobiDBLite consensus disorder prediction 1 57 - -
Pste9g00793 489 Gene3D - 55 302 IPR027417 -
Pste9g00793 489 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 76 105 IPR014014 GO:0003724
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste9g00793 Pste-Chr9 4121716 4129738 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste9g00793 78 470 Eukaryotic Initiation Factors Gene Family AT1G72730 34.491 2.98e-63 209