LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste9g00790	AAGGTTGGTTTGTGTCTTTGTGTGCTCATTTTTCACCAAACCCACACCCAACCTATATTCATCACAAACATTCTTTTTATTTCCTTTTATTTTATTTTCTTGTTTGGTTAATTAAATTAGCCTTCAAAGTTCAAATCATGGGAACCCCACAAGCTAATAACTTGCCACCAGGGTTTAGGTTCCACCCCACAGATGAAGAACTTGTTCTTCACTACCTAAGAAAGAAGGTTGCTTCTATTCCTTTGCCAGTTTCCATCATTGCTGAGGTTGATATCTACAAGTGTGATCCATGGGAGCTACCAGCTAAGGCTGAGTTTGGGGAGAAAGAGTGGTACTTTTTCAGTCCAAGAGACAGGAAGTACCCAAATGGAGCAAGGCCAAACAGGGCAGCAGCTTCAGGGTATTGGAAGGCCACAGGCACTGATAAGAACATAGTGGCATCATCTCCAGGAGGAGGGAGAGAACACTTTGGAGTGAAAAAGGCTTTGGTTTTCTACAAAGGAAGACCCCCAAAGGGTGTGAAGACCAATTGGATCATGCATGAATATCGCCTTGTAGACACCAATAAACCCATTAGAATCAAAGACACTTCCATGAGGTTGGATGACTGGGTTCTATGCAGAATATACAAGAAGTCCAAACATGCTGTGCCTTCAGCCACAGAAGCATCACCATTAGTGCAAGTGAATGAGCAAGAGCAAGCAGAAGATGAACAAATATTCAAAGACACACTTTCACCATTAACCAAGAGTTTTGTCCCTCCTCCACAAACCACACTCATATCTCAAAAATCCTTATCTTTCTCAAACCTCTTAGATGCCACAGATTACACCATGTTGAGCACTGTCTTATCTGAGAACCTGAACCACTCCAATTATCCAACTCCTACTGAAGCCTTGTTCAATTTCGAGAATCTTAATCAAGAAATAACACCCCAAAACTACACCATCACCACCACCAACAACAATAATCATAATAATAACAATAATAATAACTATTTGCTTCATAAGATCAACAACCCTTTAGTACTTTCTTCCCACATGGAAGCCATGAATAGGTCAAAACGCCAATTTTCAAACATAGATGAGGAAATAATATACCCTTCAAAGAAATACCATAGTTCCTCTTGCAATTTTCCTAAAACCAACCTTCAAAGCCAAAACAACCCACAATGGAACTTCATGTTCAAACAACCTTTCATGATGAATCACCAATTACTTCCTGGTCCTCAATATCTTCATCATTTTCAGTAAAAAAAATAATTAACAAAATAAAATAAAATATCTACAAGTTGAGCCTGCCACGTGTGCCCACACATCCAACTTGTTAGAAAGATAGCAATTATTTTCTCTTTTTCTTTGGTGTGGGAAAATGGTGAAAAGAGGTTTTGTTGGATTAGTGAACTGTTGATACTGTGGCAGAAGCAAGGTTCCACTGTTCAAGAGTCAAAAAAGAAAAGAAAAATCAAGGGTTTGATGACGACAAATCAGGACAATTCGTGTACAAAATGTTAATTTGTACCTGTTGGGTTGCAAAATTATTAGTTTCAATTATTTGTATTTTGTAAACTTGGTCTTGGTTAGGTTATGATATTATTACATTCTTTTCTGGGAATGGGTTTAAATTTTCTTTTGGATTTGCATTATCAATATTTGCCATTTATGTATAAGAGTGTGCACCTTGCTTTGAAATTTTATCCCC	1701	0.378	MGTPQANNLPPGFRFHPTDEELVLHYLRKKVASIPLPVSIIAEVDIYKCDPWELPAKAEFGEKEWYFFSPRDRKYPNGARPNRAAASGYWKATGTDKNIVASSPGGGREHFGVKKALVFYKGRPPKGVKTNWIMHEYRLVDTNKPIRIKDTSMRLDDWVLCRIYKKSKHAVPSATEASPLVQVNEQEQAEDEQIFKDTLSPLTKSFVPPPQTTLISQKSLSFSNLLDATDYTMLSTVLSENLNHSNYPTPTEALFNFENLNQEITPQNYTITTTNNNNHNNNNNNNYLLHKINNPLVLSSHMEAMNRSKRQFSNIDEEIIYPSKKYHSSSCNFPKTNLQSQNNPQWNFMFKQPFMMNHQLLPGPQYLHHFQ	371

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste9g00790	371	Gene3D	NAC domain	18	171	IPR036093	GO:0003677\|GO:0006355
	Pste9g00790	371	Pfam	No apical meristem (NAM) protein	10	139	IPR003441	GO:0003677\|GO:0006355
	Pste9g00790	371	ProSiteProfiles	NAC domain profile.	9	166	IPR003441	GO:0003677\|GO:0006355
	Pste9g00790	371	PANTHER	PROTEIN CUP-SHAPED COTYLEDON 2-RELATED	8	278	-	-
	Pste9g00790	371	SUPERFAMILY	NAC domain	6	166	IPR036093	GO:0003677\|GO:0006355
	Pste9g00790	371	FunFam	NAC transcription factor 56	18	171	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste9g00790	Pste-Chr9	4113754	4116531	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pste9g00790	7	361	NAC Transcription Factor Family	AT3G04070	50.275	1.31e-101	302

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	NAC	Pste9g00790		NAM	1.5e-40	No_clan

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