Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste9g00790 AAGGTTGGTTTGTGTCTTTGTGTGCTCATTTTTCACCAAACCCACACCCAACCTATATTCATCACAAACATTCTTTTTATTTCCTTTTATTTTATTTTCTTGTTTGGTTAATTAAATTAGCCTTCAAAGTTCAAATCATGGGAACCCCACAAGCTAATAACTTGCCACCAGGGTTTAGGTTCCACCCCACAGATGAAGAACTTGTTCTTCACTACCTAAGAAAGAAGGTTGCTTCTATTCCTTTGCCAGTTTCCATCATTGCTGAGGTTGATATCTACAAGTGTGATCCATGGGAGCTACCAGCTAAGGCTGAGTTTGGGGAGAAAGAGTGGTACTTTTTCAGTCCAAGAGACAGGAAGTACCCAAATGGAGCAAGGCCAAACAGGGCAGCAGCTTCAGGGTATTGGAAGGCCACAGGCACTGATAAGAACATAGTGGCATCATCTCCAGGAGGAGGGAGAGAACACTTTGGAGTGAAAAAGGCTTTGGTTTTCTACAAAGGAAGACCCCCAAAGGGTGTGAAGACCAATTGGATCATGCATGAATATCGCCTTGTAGACACCAATAAACCCATTAGAATCAAAGACACTTCCATGAGGTTGGATGACTGGGTTCTATGCAGAATATACAAGAAGTCCAAACATGCTGTGCCTTCAGCCACAGAAGCATCACCATTAGTGCAAGTGAATGAGCAAGAGCAAGCAGAAGATGAACAAATATTCAAAGACACACTTTCACCATTAACCAAGAGTTTTGTCCCTCCTCCACAAACCACACTCATATCTCAAAAATCCTTATCTTTCTCAAACCTCTTAGATGCCACAGATTACACCATGTTGAGCACTGTCTTATCTGAGAACCTGAACCACTCCAATTATCCAACTCCTACTGAAGCCTTGTTCAATTTCGAGAATCTTAATCAAGAAATAACACCCCAAAACTACACCATCACCACCACCAACAACAATAATCATAATAATAACAATAATAATAACTATTTGCTTCATAAGATCAACAACCCTTTAGTACTTTCTTCCCACATGGAAGCCATGAATAGGTCAAAACGCCAATTTTCAAACATAGATGAGGAAATAATATACCCTTCAAAGAAATACCATAGTTCCTCTTGCAATTTTCCTAAAACCAACCTTCAAAGCCAAAACAACCCACAATGGAACTTCATGTTCAAACAACCTTTCATGATGAATCACCAATTACTTCCTGGTCCTCAATATCTTCATCATTTTCAGTAAAAAAAATAATTAACAAAATAAAATAAAATATCTACAAGTTGAGCCTGCCACGTGTGCCCACACATCCAACTTGTTAGAAAGATAGCAATTATTTTCTCTTTTTCTTTGGTGTGGGAAAATGGTGAAAAGAGGTTTTGTTGGATTAGTGAACTGTTGATACTGTGGCAGAAGCAAGGTTCCACTGTTCAAGAGTCAAAAAAGAAAAGAAAAATCAAGGGTTTGATGACGACAAATCAGGACAATTCGTGTACAAAATGTTAATTTGTACCTGTTGGGTTGCAAAATTATTAGTTTCAATTATTTGTATTTTGTAAACTTGGTCTTGGTTAGGTTATGATATTATTACATTCTTTTCTGGGAATGGGTTTAAATTTTCTTTTGGATTTGCATTATCAATATTTGCCATTTATGTATAAGAGTGTGCACCTTGCTTTGAAATTTTATCCCC 1701 0.378 MGTPQANNLPPGFRFHPTDEELVLHYLRKKVASIPLPVSIIAEVDIYKCDPWELPAKAEFGEKEWYFFSPRDRKYPNGARPNRAAASGYWKATGTDKNIVASSPGGGREHFGVKKALVFYKGRPPKGVKTNWIMHEYRLVDTNKPIRIKDTSMRLDDWVLCRIYKKSKHAVPSATEASPLVQVNEQEQAEDEQIFKDTLSPLTKSFVPPPQTTLISQKSLSFSNLLDATDYTMLSTVLSENLNHSNYPTPTEALFNFENLNQEITPQNYTITTTNNNNHNNNNNNNYLLHKINNPLVLSSHMEAMNRSKRQFSNIDEEIIYPSKKYHSSSCNFPKTNLQSQNNPQWNFMFKQPFMMNHQLLPGPQYLHHFQ 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste9g00790 371 Gene3D NAC domain 18 171 IPR036093 GO:0003677|GO:0006355
Pste9g00790 371 Pfam No apical meristem (NAM) protein 10 139 IPR003441 GO:0003677|GO:0006355
Pste9g00790 371 ProSiteProfiles NAC domain profile. 9 166 IPR003441 GO:0003677|GO:0006355
Pste9g00790 371 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 8 278 - -
Pste9g00790 371 SUPERFAMILY NAC domain 6 166 IPR036093 GO:0003677|GO:0006355
Pste9g00790 371 FunFam NAC transcription factor 56 18 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste9g00790 Pste-Chr9 4113754 4116531 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste9g00790 7 361 NAC Transcription Factor Family AT3G04070 50.275 1.31e-101 302
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pste9g00790 NAM 1.5e-40 No_clan