Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste9g00785 CGGAAAGAAAAGAAAAAAAGAAGTGGAGGAAACTACGTCGTTTCAAAGTCCCGAACTCAAACTGTGTTTCCCGTGCAAGAAGAAGAACCTTCTGAGTTCTGTCTGAGTTGTCTTTCTCCAAAAACAAACCAAACCAAACGATGTTCTTCCCTTTCACTCTCACTCAACCCTAAGATCCTCCGTTTCTTCGTCAAGAAATCAAACCCTAAACAAAAACCAATCAATTTCGATTTCGATTTCAATTTCAATTTCAATTTCAATTTGATCACTCCGATAGCTATGGCCGCCGCAAAACCCCAACGCACACCTCAAGAAGTGGAGGACATAATCGTCCGCAAGATTTTTCTCGTCTCCCTCACCGAACTCCCCGCTTCTATCACCGATTCCAGGGTTGTGTATTTGGAACTAACCGCCGCGGAGATCCTCAGTGAAGGGAAAGAGCTTCGTCTCTCGCGTGATTCCATGGAGAGGGTTTTAATCGACCGCCTCTCCGGCCAGTTTTCCGGTTCCGGCTTCGAGACTCCGTTTTACCTTGCGGGCTGCTACCACCGCGCGCATGAGGAGGGGAAGAAGATTGCCAACATGAAAGATAAAAACTTGCGGTCTGAGATGGAGGCTGTGGTGAGGCAGGCCAAGAAGCTCTGCAATCCGGCGAGTTCTGGGGCGAAATCGCCGCTGCTGCCGCTGATTTTCGGGGAGGTTGGCGGCGGGAATGTGTTCGGCGGCGGCGGAGGGGCCAAGTTTCCGCCGGGGTTTCTGGAGGAGATTTTCAGGGACCCGGATTTTGAGAGCTTGGACCGGATTCTGAAGGGGCTGTATGAGGAGTTGAGAGGGAGTGTGATGAAGGTGTCTGCATTAGGGAACTTTCAGAACTCTTTGAGGGCATTGTTGTATTTGGTTAGGTTTCCCATTGGTGCCAAGTCGCTTGTGAATCATGAGTGGTGGATTCCCAAAGGGGTTTACATGAACGGCCGTGCCATTGAGATGACCAGCATTTTGGGTCCCTTTTTTCATATTAGTGCTCTTCCTGATCAAGCTTTTTTCAAGGGGCAGCCTGATGTTGGGCAGCAGTGTTTTTCTGATGCAACAACTAGGCGACCGGCTGATTTGTTATCGTCATTTTCCACGATAAAAACTGTCATGAACAATTTATATGATGGCCTAGGTGACGTACTTCTCATTCTCCTTAAAAGTACAGATACTCGTGAAAATGTACTTGAATATCTTGCGGAGGTGATCAATATAAATGCTTCCAGGGCTCATATACAAGTTGATCCTATTACTTGTGCAAGTTCAGGCACGTTTGTAAATCTCAGTGCTGTCCTGCTTCGTCTATGTGAGCCATTTTTAGATGCAAATTTAACAAAAAGGGATAAAATTGATGCAAGATATGTGCACTACTCAAACCGCTTGAAGTTAAGTGGGTTGACTGCTCTTCGTGCATCATCTGAAGAGGTTACTGAATGGCTTAATAGTAAAAATCCAGCTATATCTGGCACTACCAATCAATATAATGATGCTCAGAAACGTTTGCAACAATCCCAAGAGGCCAGTAGTTCTGGTAGTAATAATGCTGGTGATTTGTCAAATGAAAATTCTGCACGTGCTGAAAAGACAAAATATTCATTTATTTGCGAATGCTTCTTTATGACCGCAAGAGTTCTCAATTTAGGCCTTTTAAAAGCATTTTCTGACTTCGAACACTTAGTTCAGGATATATCTAGGTGTGAAGATGCTCTTACCACACTTAAAACCATGCAGGAGCGGTCACCCACTCCTCAAGCAGAATCAGATATAAATCGACTTGAAAAAGAAATGGAGCTGTACTCACAGGAAAAGCTATGTTATGAAGCTCAGATATTGAGGGATAACACACTCATTCAAAATGCGCTCTCCTTCTACCGCTTGATGATTGTTTGGTTGGTTGGCTTGGTGGGTGGATTTAAGATGCCTCTACCATCAACTTGTCCAATGGAATTTGCTACCATGCCTGAGCATTTTGTGGAAGATGCCATGGAACTTTTAATATTTGCTTCCCGGATTCCTAAGGCCTTAGATGGAGTTGTGTTGGATGAATTTATGAACTTCATAATTATGTTCATGGCCAGCCCCGAATTTATCAAAAATCCATACCTGAGAGCAAAGATGGTTGAAGTTTTGAACTGCTGGATGCCCCGTAGGAGTGGCTCAACTGCTACAGCCAGTTTATTCGAAGGTCACCAACTCTCTTTTGAGTATCTTGTGAGGAATCTTCTGAAACTTTATGTTGACATTGAGCTCACTGGTTCTCACACACAGTTCTATGACAAATTTAACATCCGCCATAATATTGCCGAGCTCCTCGAATACTTGTGGCAAGTCCCTAGTCATCGTAATGCTTGGAGACAGATTGCTAAAGAGGAGGAAAAGGGTGTCTATCTGAATTTCTTAAACTTTTTGATTAATGATAGTATTTATCTTCTTGATGAAAGTCTGAACAAAATTCTTGAGCTAAAAGAATTGGAAGCTGAGATGTCAAATACAGCCGAGTGGGAGAGACGACCAGTTCAAGAGAGGCAGGAGAGGACCCGGTTATTCCATTCTCAAGAAAATATTATTCGGATGGATATGAAGTTGGCGAACGAAGATGTCAGTATGCTTGCATTTACTTCAGAGCAGATTACTGCTCCATTCCTACTTCCTGAGATGGTTGAAAGAGTAGCTAGCATGCTCAATTACTTTCTTCTGCAATTGGTGGGTCCTCAAAGAAAATCGCTTAGCCTGAAGGATCCTGAGAAATATGAATTTCGTCCAAAGCATTTGTTAAAACAGATTGTGCACATCTATGTTCATCTAGCTAGGGGTGACACAAATTCCATCTTCCCAGCTGCCATCTCAAGGGATGCAGATGTCCTTAACAGAATTGGTGAGGATGGGAGGATTATACAGGAATTTATTCAACTTGGTGCTAAAGCTAAAGTTGCTGCTTCAGAGGCCATGGATACTGAAGCTACTCTAGGGGAGATACCAGATGAATTCCTTGATCCAATTCAATACACTTTGATGAAGGATCCAGTTATCTTGCCTTCTTCAAGGATCACGGTTGATCGTCCTGTCATTCAGAGGCATCTTCTTAGTGATAGTACTGACCCATTCAACCGTTCTCATCTCACTGTGGATATGTTGATTCCCGATGACGAGCTAAAAGCAAGAATTGAGGAGTTTGTCAGGTCCCAGGAAATGAAGAAACATGGTGAAGGACTAAGCCTACAGAGTTCCAAGGCCACGATTCACACTACAAATGGCGAAATGTTGATTGATTAGGAAAATATCATTAGTTTCCTAAGTTGAAATATGAATTTGTGCCATGCGCATAGAGTTAGATGTTGAATCTTAATTTAATCTTAATTCAATCATTTTTGGAAAAATTTAAGCTATCACTAGAAGTTTAAGGCTGTAAAGATATTTGGAAGTTTAATGTAAAGAAGTCATCCATCCGATTAAATACTACGATATATATCATCTTAATCTAATACAAATATGGA 3524 0.4257 RKEKKKRSGGNYVVSKSRTQTVFPVQEEEPSEFCLSCLSPKTNQTKRCSSLSLSLNPKILRFFVKKSNPKQKPINFDFDFNFNFNFNLITPIAMAAAKPQRTPQEVEDIIVRKIFLVSLTELPASITDSRVVYLELTAAEILSEGKELRLSRDSMERVLIDRLSGQFSGSGFETPFYLAGCYHRAHEEGKKIANMKDKNLRSEMEAVVRQAKKLCNPASSGAKSPLLPLIFGEVGGGNVFGGGGGAKFPPGFLEEIFRDPDFESLDRILKGLYEELRGSVMKVSALGNFQNSLRALLYLVRFPIGAKSLVNHEWWIPKGVYMNGRAIEMTSILGPFFHISALPDQAFFKGQPDVGQQCFSDATTRRPADLLSSFSTIKTVMNNLYDGLGDVLLILLKSTDTRENVLEYLAEVININASRAHIQVDPITCASSGTFVNLSAVLLRLCEPFLDANLTKRDKIDARYVHYSNRLKLSGLTALRASSEEVTEWLNSKNPAISGTTNQYNDAQKRLQQSQEASSSGSNNAGDLSNENSARAEKTKYSFICECFFMTARVLNLGLLKAFSDFEHLVQDISRCEDALTTLKTMQERSPTPQAESDINRLEKEMELYSQEKLCYEAQILRDNTLIQNALSFYRLMIVWLVGLVGGFKMPLPSTCPMEFATMPEHFVEDAMELLIFASRIPKALDGVVLDEFMNFIIMFMASPEFIKNPYLRAKMVEVLNCWMPRRSGSTATASLFEGHQLSFEYLVRNLLKLYVDIELTGSHTQFYDKFNIRHNIAELLEYLWQVPSHRNAWRQIAKEEEKGVYLNFLNFLINDSIYLLDESLNKILELKELEAEMSNTAEWERRPVQERQERTRLFHSQENIIRMDMKLANEDVSMLAFTSEQITAPFLLPEMVERVASMLNYFLLQLVGPQRKSLSLKDPEKYEFRPKHLLKQIVHIYVHLARGDTNSIFPAAISRDADVLNRIGEDGRIIQEFIQLGAKAKVAASEAMDTEATLGEIPDEFLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLSDSTDPFNRSHLTVDMLIPDDELKARIEEFVRSQEMKKHGEGLSLQSSKATIHTTNGEMLID 1100
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste9g00785 1100 Coils Coil 497 517 - -
Pste9g00785 1100 CDD RING-Ubox_UBE4A 1004 1072 - -
Pste9g00785 1100 Pfam U-box domain 1002 1073 IPR003613 GO:0004842|GO:0016567
Pste9g00785 1100 MobiDBLite consensus disorder prediction 507 531 - -
Pste9g00785 1100 FunFam Ubiquitin conjugation factor e4 a 1001 1079 - -
Pste9g00785 1100 Pfam Ubiquitin elongating factor core 333 962 IPR019474 GO:0000151|GO:0006511|GO:0016567|GO:0034450
Pste9g00785 1100 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1001 1079 IPR013083 -
Pste9g00785 1100 SMART Ubox_2 1005 1068 IPR003613 GO:0004842|GO:0016567
Pste9g00785 1100 Coils Coil 592 619 - -
Pste9g00785 1100 ProSiteProfiles U-box domain profile. 1001 1075 IPR003613 GO:0004842|GO:0016567
Pste9g00785 1100 PANTHER UBIQUITINATION FACTOR E4 60 1077 IPR045132 GO:0000151|GO:0030433|GO:0034450
Pste9g00785 1100 SUPERFAMILY RING/U-box 994 1074 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste9g00785 94 1100 U-box Gene Family AT5G15400 73.117 0.0 1529