LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste9g00785	CGGAAAGAAAAGAAAAAAAGAAGTGGAGGAAACTACGTCGTTTCAAAGTCCCGAACTCAAACTGTGTTTCCCGTGCAAGAAGAAGAACCTTCTGAGTTCTGTCTGAGTTGTCTTTCTCCAAAAACAAACCAAACCAAACGATGTTCTTCCCTTTCACTCTCACTCAACCCTAAGATCCTCCGTTTCTTCGTCAAGAAATCAAACCCTAAACAAAAACCAATCAATTTCGATTTCGATTTCAATTTCAATTTCAATTTCAATTTGATCACTCCGATAGCTATGGCCGCCGCAAAACCCCAACGCACACCTCAAGAAGTGGAGGACATAATCGTCCGCAAGATTTTTCTCGTCTCCCTCACCGAACTCCCCGCTTCTATCACCGATTCCAGGGTTGTGTATTTGGAACTAACCGCCGCGGAGATCCTCAGTGAAGGGAAAGAGCTTCGTCTCTCGCGTGATTCCATGGAGAGGGTTTTAATCGACCGCCTCTCCGGCCAGTTTTCCGGTTCCGGCTTCGAGACTCCGTTTTACCTTGCGGGCTGCTACCACCGCGCGCATGAGGAGGGGAAGAAGATTGCCAACATGAAAGATAAAAACTTGCGGTCTGAGATGGAGGCTGTGGTGAGGCAGGCCAAGAAGCTCTGCAATCCGGCGAGTTCTGGGGCGAAATCGCCGCTGCTGCCGCTGATTTTCGGGGAGGTTGGCGGCGGGAATGTGTTCGGCGGCGGCGGAGGGGCCAAGTTTCCGCCGGGGTTTCTGGAGGAGATTTTCAGGGACCCGGATTTTGAGAGCTTGGACCGGATTCTGAAGGGGCTGTATGAGGAGTTGAGAGGGAGTGTGATGAAGGTGTCTGCATTAGGGAACTTTCAGAACTCTTTGAGGGCATTGTTGTATTTGGTTAGGTTTCCCATTGGTGCCAAGTCGCTTGTGAATCATGAGTGGTGGATTCCCAAAGGGGTTTACATGAACGGCCGTGCCATTGAGATGACCAGCATTTTGGGTCCCTTTTTTCATATTAGTGCTCTTCCTGATCAAGCTTTTTTCAAGGGGCAGCCTGATGTTGGGCAGCAGTGTTTTTCTGATGCAACAACTAGGCGACCGGCTGATTTGTTATCGTCATTTTCCACGATAAAAACTGTCATGAACAATTTATATGATGGCCTAGGTGACGTACTTCTCATTCTCCTTAAAAGTACAGATACTCGTGAAAATGTACTTGAATATCTTGCGGAGGTGATCAATATAAATGCTTCCAGGGCTCATATACAAGTTGATCCTATTACTTGTGCAAGTTCAGGCACGTTTGTAAATCTCAGTGCTGTCCTGCTTCGTCTATGTGAGCCATTTTTAGATGCAAATTTAACAAAAAGGGATAAAATTGATGCAAGATATGTGCACTACTCAAACCGCTTGAAGTTAAGTGGGTTGACTGCTCTTCGTGCATCATCTGAAGAGGTTACTGAATGGCTTAATAGTAAAAATCCAGCTATATCTGGCACTACCAATCAATATAATGATGCTCAGAAACGTTTGCAACAATCCCAAGAGGCCAGTAGTTCTGGTAGTAATAATGCTGGTGATTTGTCAAATGAAAATTCTGCACGTGCTGAAAAGACAAAATATTCATTTATTTGCGAATGCTTCTTTATGACCGCAAGAGTTCTCAATTTAGGCCTTTTAAAAGCATTTTCTGACTTCGAACACTTAGTTCAGGATATATCTAGGTGTGAAGATGCTCTTACCACACTTAAAACCATGCAGGAGCGGTCACCCACTCCTCAAGCAGAATCAGATATAAATCGACTTGAAAAAGAAATGGAGCTGTACTCACAGGAAAAGCTATGTTATGAAGCTCAGATATTGAGGGATAACACACTCATTCAAAATGCGCTCTCCTTCTACCGCTTGATGATTGTTTGGTTGGTTGGCTTGGTGGGTGGATTTAAGATGCCTCTACCATCAACTTGTCCAATGGAATTTGCTACCATGCCTGAGCATTTTGTGGAAGATGCCATGGAACTTTTAATATTTGCTTCCCGGATTCCTAAGGCCTTAGATGGAGTTGTGTTGGATGAATTTATGAACTTCATAATTATGTTCATGGCCAGCCCCGAATTTATCAAAAATCCATACCTGAGAGCAAAGATGGTTGAAGTTTTGAACTGCTGGATGCCCCGTAGGAGTGGCTCAACTGCTACAGCCAGTTTATTCGAAGGTCACCAACTCTCTTTTGAGTATCTTGTGAGGAATCTTCTGAAACTTTATGTTGACATTGAGCTCACTGGTTCTCACACACAGTTCTATGACAAATTTAACATCCGCCATAATATTGCCGAGCTCCTCGAATACTTGTGGCAAGTCCCTAGTCATCGTAATGCTTGGAGACAGATTGCTAAAGAGGAGGAAAAGGGTGTCTATCTGAATTTCTTAAACTTTTTGATTAATGATAGTATTTATCTTCTTGATGAAAGTCTGAACAAAATTCTTGAGCTAAAAGAATTGGAAGCTGAGATGTCAAATACAGCCGAGTGGGAGAGACGACCAGTTCAAGAGAGGCAGGAGAGGACCCGGTTATTCCATTCTCAAGAAAATATTATTCGGATGGATATGAAGTTGGCGAACGAAGATGTCAGTATGCTTGCATTTACTTCAGAGCAGATTACTGCTCCATTCCTACTTCCTGAGATGGTTGAAAGAGTAGCTAGCATGCTCAATTACTTTCTTCTGCAATTGGTGGGTCCTCAAAGAAAATCGCTTAGCCTGAAGGATCCTGAGAAATATGAATTTCGTCCAAAGCATTTGTTAAAACAGATTGTGCACATCTATGTTCATCTAGCTAGGGGTGACACAAATTCCATCTTCCCAGCTGCCATCTCAAGGGATGCAGATGTCCTTAACAGAATTGGTGAGGATGGGAGGATTATACAGGAATTTATTCAACTTGGTGCTAAAGCTAAAGTTGCTGCTTCAGAGGCCATGGATACTGAAGCTACTCTAGGGGAGATACCAGATGAATTCCTTGATCCAATTCAATACACTTTGATGAAGGATCCAGTTATCTTGCCTTCTTCAAGGATCACGGTTGATCGTCCTGTCATTCAGAGGCATCTTCTTAGTGATAGTACTGACCCATTCAACCGTTCTCATCTCACTGTGGATATGTTGATTCCCGATGACGAGCTAAAAGCAAGAATTGAGGAGTTTGTCAGGTCCCAGGAAATGAAGAAACATGGTGAAGGACTAAGCCTACAGAGTTCCAAGGCCACGATTCACACTACAAATGGCGAAATGTTGATTGATTAGGAAAATATCATTAGTTTCCTAAGTTGAAATATGAATTTGTGCCATGCGCATAGAGTTAGATGTTGAATCTTAATTTAATCTTAATTCAATCATTTTTGGAAAAATTTAAGCTATCACTAGAAGTTTAAGGCTGTAAAGATATTTGGAAGTTTAATGTAAAGAAGTCATCCATCCGATTAAATACTACGATATATATCATCTTAATCTAATACAAATATGGA	3524	0.4257	RKEKKKRSGGNYVVSKSRTQTVFPVQEEEPSEFCLSCLSPKTNQTKRCSSLSLSLNPKILRFFVKKSNPKQKPINFDFDFNFNFNFNLITPIAMAAAKPQRTPQEVEDIIVRKIFLVSLTELPASITDSRVVYLELTAAEILSEGKELRLSRDSMERVLIDRLSGQFSGSGFETPFYLAGCYHRAHEEGKKIANMKDKNLRSEMEAVVRQAKKLCNPASSGAKSPLLPLIFGEVGGGNVFGGGGGAKFPPGFLEEIFRDPDFESLDRILKGLYEELRGSVMKVSALGNFQNSLRALLYLVRFPIGAKSLVNHEWWIPKGVYMNGRAIEMTSILGPFFHISALPDQAFFKGQPDVGQQCFSDATTRRPADLLSSFSTIKTVMNNLYDGLGDVLLILLKSTDTRENVLEYLAEVININASRAHIQVDPITCASSGTFVNLSAVLLRLCEPFLDANLTKRDKIDARYVHYSNRLKLSGLTALRASSEEVTEWLNSKNPAISGTTNQYNDAQKRLQQSQEASSSGSNNAGDLSNENSARAEKTKYSFICECFFMTARVLNLGLLKAFSDFEHLVQDISRCEDALTTLKTMQERSPTPQAESDINRLEKEMELYSQEKLCYEAQILRDNTLIQNALSFYRLMIVWLVGLVGGFKMPLPSTCPMEFATMPEHFVEDAMELLIFASRIPKALDGVVLDEFMNFIIMFMASPEFIKNPYLRAKMVEVLNCWMPRRSGSTATASLFEGHQLSFEYLVRNLLKLYVDIELTGSHTQFYDKFNIRHNIAELLEYLWQVPSHRNAWRQIAKEEEKGVYLNFLNFLINDSIYLLDESLNKILELKELEAEMSNTAEWERRPVQERQERTRLFHSQENIIRMDMKLANEDVSMLAFTSEQITAPFLLPEMVERVASMLNYFLLQLVGPQRKSLSLKDPEKYEFRPKHLLKQIVHIYVHLARGDTNSIFPAAISRDADVLNRIGEDGRIIQEFIQLGAKAKVAASEAMDTEATLGEIPDEFLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLSDSTDPFNRSHLTVDMLIPDDELKARIEEFVRSQEMKKHGEGLSLQSSKATIHTTNGEMLID	1100

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste9g00785	1100	Coils	Coil	497	517	-	-
	Pste9g00785	1100	CDD	RING-Ubox_UBE4A	1004	1072	-	-
	Pste9g00785	1100	Pfam	U-box domain	1002	1073	IPR003613	GO:0004842\|GO:0016567
	Pste9g00785	1100	MobiDBLite	consensus disorder prediction	507	531	-	-
	Pste9g00785	1100	FunFam	Ubiquitin conjugation factor e4 a	1001	1079	-	-
	Pste9g00785	1100	Pfam	Ubiquitin elongating factor core	333	962	IPR019474	GO:0000151\|GO:0006511\|GO:0016567\|GO:0034450
	Pste9g00785	1100	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	1001	1079	IPR013083	-
	Pste9g00785	1100	SMART	Ubox_2	1005	1068	IPR003613	GO:0004842\|GO:0016567
	Pste9g00785	1100	Coils	Coil	592	619	-	-
	Pste9g00785	1100	ProSiteProfiles	U-box domain profile.	1001	1075	IPR003613	GO:0004842\|GO:0016567

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pste9g00785	94	1100	U-box Gene Family	AT5G15400	73.117	0.0	1529

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