Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste9g00775 ATGAACGATCTTATGACGAAATCTTTCACCAGCTACGTGGACCTGAAAAAGGAAGCAATGAAAGACATAGACCTAGAATCTGGTCTTGCTGTTCCCAGCAGAAACGTGGAACTCAGATCGTCCACGAGCCACCTCGACACCGACATGGGACTCTTCCTGGAAGAGGCCGAAAAGGTGAAGACCGAAATGAGTTCCCTAAGGGACATCCTGGGCAGCCTGCAGCAGGCCAACGAGGAGAGCAAAAGGCCAGAGGCGATCCGGGCCCAGCTTGAGGAGATGGACAAGGCCAATGCCGCCAACAGGCGGCTCTCTGGCCTCAAGGATGGCTCCCCGGCCATCTACCGGACCCGGATCGCCGTCACCAATGGGCTCAGGAAGAAGTTGAAGGAGTTGATGATGGAGTTTCAAGGGTTGAGGCAGAGGATGATGAGTGAGTACAAAGAAACTGTGGAGAGAAGGTACTTCACAGTGACAGGGGAGCACCCAGATGAGGAGGTGATTGAGAAGATCATTGCCAATGGGAATGAAGAAGAGATTCTGGGGAAGGCCATACAGGAACATGGGAGAGGGAAGGTTCTGGAAACTGTGGTGGAGATTCAGGACAGGCATGATGCTGCTAAGGAAGTGGAGAAGAGTTTGCTGGAGCTGCACCAGGTGTTTCTGGACATGGCTGTGATGGTTGAGGCACAGGGTGAGAAAATGGATGACATTGAGCATCATGTGTTGCATGCTTCACATTATGTTAAGGATGGGACCAAGAATCTCCAGACAGCTAAGCAGTACCAGAGGAGTAGCAGGAAGTGGATGTGTATTGGGATCATTCTGCTGCTCATTCTTATTCTCGTTATTGTTATTCCTGTTGCCACCAGTCTAAGCAGTTCTTGAGTTTGGATGCATCTTCTTGACTCATCATATCATCCATGATGGGGTATGAGGTCCCATGTTTCTATGTTGTTTTTTGTAAATTTTGTTTGCATTTTAGTGATGATGATAGTTATTTTTTTCGCAAATTTTTTTAATTGTAGTTAAGGTTACCTTAACCATGCGATTGAAAAAAGGCCTTATGGGGCATATTTTGTAAAATCCATTTTAAGCAAAATTATAACATGATTTTTTCTATCTTCTCTATCCTCTATCATCAAGAGTAGTGATAATGTTCAAATGTGACATTTTTGAATTGTTAATGCAAACTCTGCTTGCATTTTTTATTA 1211 0.4525 MNDLMTKSFTSYVDLKKEAMKDIDLESGLAVPSRNVELRSSTSHLDTDMGLFLEEAEKVKTEMSSLRDILGSLQQANEESKRPEAIRAQLEEMDKANAANRRLSGLKDGSPAIYRTRIAVTNGLRKKLKELMMEFQGLRQRMMSEYKETVERRYFTVTGEHPDEEVIEKIIANGNEEEILGKAIQEHGRGKVLETVVEIQDRHDAAKEVEKSLLELHQVFLDMAVMVEAQGEKMDDIEHHVLHASHYVKDGTKNLQTAKQYQRSSRKWMCIGIILLLILILVIVIPVATSLSSS 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste9g00775 294 CDD SNARE_syntaxin1-like 195 257 - -
Pste9g00775 294 Coils Coil 121 141 - -
Pste9g00775 294 PANTHER SYNTAXIN 60 280 IPR045242 -
Pste9g00775 294 ProSitePatterns Syntaxin / epimorphin family signature. 202 242 IPR006012 GO:0005484|GO:0006886|GO:0016020
Pste9g00775 294 Gene3D - 192 291 - -
Pste9g00775 294 SMART SynN_4 44 147 IPR006011 GO:0016020
Pste9g00775 294 FunFam Syntaxin 132 189 289 - -
Pste9g00775 294 Pfam SNARE domain 233 284 IPR000727 -
Pste9g00775 294 SUPERFAMILY t-snare proteins 47 251 IPR010989 GO:0016020|GO:0016192
Pste9g00775 294 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 196 258 IPR000727 -
Pste9g00775 294 Gene3D - 80 153 - -
Pste9g00775 294 SMART tSNARE_6 191 258 IPR000727 -
Pste9g00775 294 CDD SynN 49 183 IPR006011 GO:0016020
Pste9g00775 294 Pfam Syntaxin 80 231 IPR006011 GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste9g00775 Pste-Chr9 4038774 4040670 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste9g00775 1 294 SNARE and Associated Proteins AT1G08560 61.562 1.14e-120 346